Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26990 381 / 1e-127 ENTH/VHS family protein (.1) AT5G65180 191 / 3e-55 ENTH/VHS family protein (.1.2) AT5G10060 190 / 1e-54 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035182 [exp] 790 / 0 AT3G26990 469 / 7e-162 ENTH/VHS family protein (.1) Lus10020327 [exp] 197 / 2e-56 AT3G26990 297 / 4e-94 ENTH/VHS family protein (.1) Lus10005665 [exp] 196 / 4e-56 AT3G26990 301 / 1e-95 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325700 [exp] 498 / 3e-173 AT3G26990 467 / 8e-161 ENTH/VHS family protein (.1) Potri.007G086700 [exp] 209 / 4e-61 AT5G65180 438 / 9e-151 ENTH/VHS family protein (.1.2) Potri.005G080600 [exp] 191 / 1e-54 AT5G65180 360 / 2e-120 ENTH/VHS family protein (.1.2) Potri.005G080800 [exp] 186 / 2e-52 AT5G65180 357 / 5e-119 ENTH/VHS family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10032013 pacid=23161187 polypeptide=Lus10032013 locus=Lus10032013.g ID=Lus10032013.BGIv1.0 annot-version=v1.0 ATGGGCAGCTCATTCAATCCTCAGATCTTGGTGGAGAAGCTCACCAAGCTCAATAATTCACAAGCAAGCATAGAGACCAAGCATGTTGTTGAAACATGGG CCAGACAGTTCCATTCTTCTCCACGTGAGCAGAGATTAGCTTTCCTTTATCTTGCCAATGATATACTACAAAATAGTCGTCGAAAAGGGTCGGAGTTTGT TGGTGAATTCTGGAAAGTTCTCCCAGAAGCTCTTCGCGATGTTATTGATCATGGCGATGAGTTTGGGCGAAATTCTGCAATGCGATTGATTGGCATATGG GAAGACAGAAAAGTCTTTGGTTCTAGGGGACAAGTTTTGAAGGAAGAGCTACTTGGGAGGCAGTTGGAAAATAGTCGTAGGAATGGAAAGAATTTAGATA CAAGCTCTAAACTGAGGCACCCCATTGGAAGTACAGTGGACAAGATAGTTTCTGGTTACCATGTTGTTTACAGTGGAAAGGATGAAGATGCCATACTGGG AAAGTGTAGTAGTTCTATCTCTTTTTTTGAGAAAGTTGATAAAGAAGTTCGTGACAATAACTCAGGTAAAGTACATGAACCTGCATTTGTGGAGGAGGTA CAGGGGCAGTATGTTGCTCTGATGGATAGCATTGAGCAATTGGTGGCCATTGAATCATCAAAAGCAAGTCTTGTATCTCATCTTACAGAGGCTCTTCAAG AGCAGGAAGCGAAACTGCAACAAATTAGGCATCAACTTCAGGTAGCCCGCTCCCAATCAGAAACTGCAGATAATCTACGCCAGCAGCTGGTCCAAGCGAG CAACCCCCAGTCAGTGACCGATCAAAACTCAAAGGAGGCTACTAACTCTGTTGCATCTCAAGGCTTTGTTTCTGGGGATGGGGAACAAACTGCTCCATCA ATGTACGCCAGGCAGGTCTCCTTTCCTCCTGAGAATCAGCCCAACCACATGGAGGAAGATCCTCGAAAATCTGCCGCCGCTGCTATTGCTGCAAAACTAA CTGCATCTTCATCCTCCGCTCAGATGCTTTCGTACGTACTTTCCTCCCTTGCATCTGAAGGTGTCATCGGCAACAAGCCAGCGAATGAAGCCTTCTCCAA TGACTACCCTCCTGAGAAGAGGTCTAGGCTCGAAAACCAAAACGAACCTTACATACCGACCGGTCAGAATTCTCAACAAGCTCAGTCACCTTACCAGCCT TCTGAATCATCAATTGATCCTCCTCCTCTACCTTCGTCTCCTCCGCCAATGGCGCCCTTACCACCTCCTTACTCCATGCCTCCTTATGTACCGACAGCTG GACCGATGAATGGTTTGCCATATGGTTATGGCGTGTCTCAGCAACTTCAGCCCCCTCTGCAAGGATTCTCACAAGTTGCCACTTCCATGACTGGTATTCC TCCTTTCGGAATCTCTCAGACGACGAATTCATACCAAAGCTATCAGAGTTCTGGAGGTAACCGATACACGCAGCAACCGTCGTCGATGCCCATGGCACCG ATGTCCCGGCAGTAG
AA sequence Show only first row Show all	>Lus10032013 pacid=23161187 polypeptide=Lus10032013 locus=Lus10032013.g ID=Lus10032013.BGIv1.0 annot-version=v1.0 MGSSFNPQILVEKLTKLNNSQASIETKHVVETWARQFHSSPREQRLAFLYLANDILQNSRRKGSEFVGEFWKVLPEALRDVIDHGDEFGRNSAMRLIGIW EDRKVFGSRGQVLKEELLGRQLENSRRNGKNLDTSSKLRHPIGSTVDKIVSGYHVVYSGKDEDAILGKCSSSISFFEKVDKEVRDNNSGKVHEPAFVEEV QGQYVALMDSIEQLVAIESSKASLVSHLTEALQEQEAKLQQIRHQLQVARSQSETADNLRQQLVQASNPQSVTDQNSKEATNSVASQGFVSGDGEQTAPS MYARQVSFPPENQPNHMEEDPRKSAAAAIAAKLTASSSSAQMLSYVLSSLASEGVIGNKPANEAFSNDYPPEKRSRLENQNEPYIPTGQNSQQAQSPYQP SESSIDPPPLPSSPPPMAPLPPPYSMPPYVPTAGPMNGLPYGYGVSQQLQPPLQGFSQVATSMTGIPPFGISQTTNSYQSYQSSGGNRYTQQPSSMPMAP MSRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	0	1
AT3G26990			ENTH/VHS family protein (.1)		Lus10035182 [exp]	1.4	0.8617
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10000655 [exp]	3.7	0.8189
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	4.5	0.8279
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	4.9	0.8295
AT5G41920	GRAS		GRAS family transcription fact...		Lus10010462 [exp]	7.2	0.8298
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	9.0	0.8054
AT1G49870			unknown protein		Lus10013902 [exp]	10.4	0.8012
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Lus10006874 [exp]	10.7	0.7660
AT1G64260			MuDR family transposase (.1)		Lus10038037 [exp]	11.0	0.8199
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019605 [exp]	12.0	0.7949

Compare expression of checked genes

Lus10032013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.