Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39190 262 / 3e-89 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) AT5G39130 261 / 6e-89 RmlC-like cupins superfamily protein (.1) AT3G05950 258 / 1e-87 RmlC-like cupins superfamily protein (.1) AT5G39120 253 / 6e-86 RmlC-like cupins superfamily protein (.1) AT5G39150 253 / 1e-85 RmlC-like cupins superfamily protein (.1) AT5G39180 251 / 3e-85 RmlC-like cupins superfamily protein (.1) AT5G39110 249 / 3e-84 RmlC-like cupins superfamily protein (.1) AT5G38910 243 / 5e-82 RmlC-like cupins superfamily protein (.1) AT4G14630 242 / 2e-81 GLP9 germin-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032016 [exp] 435 / 1e-157 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 421 / 3e-152 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 413 / 7e-149 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032017 [exp] 386 / 5e-137 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10030047 [exp] 355 / 4e-126 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10035280 [exp] 353 / 2e-125 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 340 / 4e-120 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 337 / 5e-119 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 336 / 2e-118 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163800 [exp] 327 / 6e-115 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 323 / 1e-113 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 323 / 1e-113 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163300 [exp] 313 / 2e-109 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 312 / 3e-109 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G465100 [exp] 301 / 7e-105 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 295 / 2e-102 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 286 / 7e-99 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 285 / 2e-98 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052000 [exp] 269 / 3e-92 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10032015 pacid=23161188 polypeptide=Lus10032015 locus=Lus10032015.g ID=Lus10032015.BGIv1.0 annot-version=v1.0 ATGGCACATCTTGCTGCTTTCTTCACCTTGGTAACTTTTGCTGTTTGTGCAAGTCTCACCTTTGCCATGGATCCTTCCAATCTCCAGGATTTCTGTGTGG CCGATCCCAATGCCGGCGTAAGGCTCAACGGTTTCGCATGCAAGAACCCTGCAACGGTCCAAGCTAGCGATTTTTCGTTTAGCGGACTTCACATCCCTGG CAATACGTCAAATGCGGTGGGCTCAAGGGTCACCCCTGTTTCCGTGACCCAGATTCCCGGGTTGAACACTCTTGGGATTTCATTAGTCCGCATTGACTAT GCTCCTTGGGGTATTAACCCTCTCCACACCCATCCTCGTGCCACCGAGATTCTCACGGTTATTGAAGGGTCTCTTGAGGTCGGATTTGTCACATCCAACC CTGAGAATCGTCTCATCTCTAAGATCATTCATAAAGGGGACGTGTTTGTCTTCCCCATTGGGTTGATTCACTTCCAACGTAATGTTGGGTACGGAAACGC GGTAGCTATCGCTGGATTGAGCAGCCAAAACCCTGGAGTCATCACTATTGCCAACTCTGTCTTTGGAGCGAAGCCCGATATCTCTAGCGACATCCTTGCC AAGGCTTTCCAGGTTGACAAACGTGTTGTGAAGCAGCTCCAAACCAAGTTCTAA
AA sequence Show only first row Show all	>Lus10032015 pacid=23161188 polypeptide=Lus10032015 locus=Lus10032015.g ID=Lus10032015.BGIv1.0 annot-version=v1.0 MAHLAAFFTLVTFAVCASLTFAMDPSNLQDFCVADPNAGVRLNGFACKNPATVQASDFSFSGLHIPGNTSNAVGSRVTPVSVTQIPGLNTLGISLVRIDY APWGINPLHTHPRATEILTVIEGSLEVGFVTSNPENRLISKIIHKGDVFVFPIGLIHFQRNVGYGNAVAIAGLSSQNPGVITIANSVFGAKPDISSDILA KAFQVDKRVVKQLQTKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39160			RmlC-like cupins superfamily p...		Lus10032015 [exp]	0	1
AT1G35210			unknown protein		Lus10036476 [exp]	1.0	0.9919
AT3G05950			RmlC-like cupins superfamily p...		Lus10032017 [exp]	5.1	0.9825
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10011185 [exp]	5.2	0.9871
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	5.3	0.9904
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	7.9	0.9880
AT1G14550			Peroxidase superfamily protein...		Lus10009902 [exp]	8.5	0.9891
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	8.5	0.9873
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	8.7	0.9896
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	8.9	0.9849
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	10.0	0.9858

Compare expression of checked genes

Lus10032015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.