Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 436 / 1e-150 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 388 / 2e-132 HXXXD-type acyl-transferase family protein (.1) AT3G48720 372 / 7e-126 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 224 / 2e-68 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 206 / 1e-61 HXXXD-type acyl-transferase family protein (.1) AT5G17540 201 / 2e-59 HXXXD-type acyl-transferase family protein (.1) AT3G03480 191 / 7e-56 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT1G03390 190 / 2e-55 HXXXD-type acyl-transferase family protein (.1) AT2G19070 181 / 8e-52 SHT spermidine hydroxycinnamoyl transferase (.1) AT1G65450 177 / 1e-50 HXXXD-type acyl-transferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035189 [exp] 710 / 0 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 697 / 0 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10035188 [exp] 559 / 0 AT5G41040 313 / 3e-105 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 435 / 3e-150 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 432 / 9e-150 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 432 / 4e-149 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 431 / 7e-149 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 425 / 9e-147 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 421 / 3e-145 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 455 / 2e-158 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 434 / 2e-150 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 395 / 1e-135 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 334 / 5e-111 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G042900 [exp] 246 / 3e-77 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 246 / 4e-77 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 236 / 5e-73 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 231 / 4e-71 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.013G074500 [exp] 226 / 6e-69 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 223 / 1e-67 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10032019 pacid=23161219 polypeptide=Lus10032019 locus=Lus10032019.g ID=Lus10032019.BGIv1.0 annot-version=v1.0 ATGGCTTACGCGAACGGAAACGACGTCGTTCGCGACTCCAAAGTCGCACTTAACGTGAAGGTGGTAGGAGAACCAACCCTGGTGCGGCCGGCAGAGGAAG CAAACAGAGGAATCTTCTTCCTGTCCAATCTGGACGACGAACACGCGATTGTGCGAACTTTATACTGCTACAAGTCGTCGTCGTCCGTTGAAAAAGTCAG CGAGGATGTTTGTGAAGTGATCAAGACTGCGTTGAGCAAAGTTCTGGTTCACTACTACCCTATCGCCGGCCGGATAACACTCACCGGCGATGGAAGGCGT GCGATGGATTGCACCGCCGGCGAGGGAGTTGTGTTTGTTGAGGCTGAGGCAGACTGTGAGCTGGACAAGATCGTTGACCTTAGGACGGTTGACGAAGGGA CACGTGGCAAGCTGGTTTATGATCTTCCCGGCGCTAAGAGTACCATGGATTACCCTCCTCTTATGGCCCAGGTGACCAAGTTCAAGTGTGGAGGGTTTGT GCTAGGGCTAGCCTTTAGCCATTTCGCGGCGGATGGTATTTCAGCAGTCGATTTCGTCAACTCGTGGGGTGAAACCGCTCGAGGAATCCCGCTCTCGTTG CCACCATTCCATGACCGGACCTTGCTCAAGGCTCGTACCCCGCTAAAAATCGAACATCACCACTCGGAATATGACTCGTTACCTGACAAATCATCTGAGC TCAACGGTCCGGTACCCGATGAAGAAATGGTCTATAAGTTTGTTCATTTCAACCCGGAAATTATCAACAAAATTAAGCAGGATATATCGACGGAGAAAAA ATGTTCCACTTTCAAGGCTCTGACTGCATTCGTCTGGAGGGCTCGAACCATAGCTCTCAAGATGGCTCGTGACCAGCTCACGAGGGTGCTCGTGGTCGTA AACGTTAGGGACAAGTTTGATCCCCCGTTGCCTAAAGGGTACTTTGGGAATGCAGTAAAGTTCAATCCTGCCACGTGCTTGGCAGGTGAACTCGTGGACG AGCCACTATCCTATGCGGTTGGGTTGATTGAAGATGCAATTGATAGGGTCGATGATGGACTCCTGAGGTCTACCATCGATTACTATCAACTGACAAAGGC AAACCGTCCGCAAGGATTTACATGTATTTCGACCTCATGGAGTAGGTTATCATTTGGTTCAACCGATTTTGGATGGGGTGAACCTGTTGCGACCGGTCCA GTCGCCTTGCCCGTGAATGAAGCAATGTTCTTCATTCCGGACGGGAAGATGGGCATGCATGTCTATATGGGCCTGCCGGTCTCTGCTATGAAGACTTTCC AAGACTTGGCCCAGCAAATTTAG
AA sequence Show only first row Show all	>Lus10032019 pacid=23161219 polypeptide=Lus10032019 locus=Lus10032019.g ID=Lus10032019.BGIv1.0 annot-version=v1.0 MAYANGNDVVRDSKVALNVKVVGEPTLVRPAEEANRGIFFLSNLDDEHAIVRTLYCYKSSSSVEKVSEDVCEVIKTALSKVLVHYYPIAGRITLTGDGRR AMDCTAGEGVVFVEAEADCELDKIVDLRTVDEGTRGKLVYDLPGAKSTMDYPPLMAQVTKFKCGGFVLGLAFSHFAADGISAVDFVNSWGETARGIPLSL PPFHDRTLLKARTPLKIEHHHSEYDSLPDKSSELNGPVPDEEMVYKFVHFNPEIINKIKQDISTEKKCSTFKALTAFVWRARTIALKMARDQLTRVLVVV NVRDKFDPPLPKGYFGNAVKFNPATCLAGELVDEPLSYAVGLIEDAIDRVDDGLLRSTIDYYQLTKANRPQGFTCISTSWSRLSFGSTDFGWGEPVATGP VALPVNEAMFFIPDGKMGMHVYMGLPVSAMKTFQDLAQQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032019 [exp]	0	1
AT4G19500			nucleoside-triphosphatases;tra...		Lus10006907 [exp]	2.0	0.8443
AT3G47570			Leucine-rich repeat protein ki...		Lus10006445 [exp]	3.7	0.8339
					Lus10005309 [exp]	4.7	0.8474
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	6.7	0.8448
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	7.1	0.8615
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	19.1	0.8342
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	19.2	0.8189
AT3G10360		APUM4	pumilio 4 (.1)		Lus10037976 [exp]	19.4	0.7826
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	24.5	0.8116
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10041822 [exp]	25.0	0.7828

Compare expression of checked genes

Lus10032019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.