Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 442 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 377 / 2e-126 HXXXD-type acyl-transferase family protein (.1) AT3G48720 365 / 2e-121 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 223 / 8e-67 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 214 / 2e-63 HXXXD-type acyl-transferase family protein (.1) AT5G17540 202 / 1e-58 HXXXD-type acyl-transferase family protein (.1) AT5G57840 189 / 6e-54 HXXXD-type acyl-transferase family protein (.1) AT3G03480 189 / 1e-53 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT1G65450 184 / 6e-52 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G03390 182 / 3e-51 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035189 [exp] 800 / 0 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 697 / 0 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10035188 [exp] 522 / 0 AT5G41040 313 / 3e-105 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 464 / 7e-160 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 446 / 3e-153 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 436 / 1e-148 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 430 / 1e-146 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 429 / 5e-146 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 424 / 3e-144 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 468 / 1e-161 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 437 / 2e-149 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 396 / 7e-134 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 331 / 5e-108 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.018G104700 [exp] 248 / 6e-76 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 242 / 8e-74 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 231 / 7e-70 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G447300 [exp] 231 / 2e-69 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1) Potri.003G183900 [exp] 230 / 2e-69 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G447500 [exp] 230 / 4e-69 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10032020 pacid=23161143 polypeptide=Lus10032020 locus=Lus10032020.g ID=Lus10032020.BGIv1.0 annot-version=v1.0 ATGGTGGAACAAAAGCACTCCAACAACGGGACACAACAAAACCCAGAAAACATGTTCCAACTCACGGTGAAGAAATGGAACAGCTGTTTGGTTCCGCCGG CGGCAGCAGAAACGTCCGACGTCAGAGGCAACGGAGACGCCGGGGAAGTCATCAAGGACGCCCTGGGGAAAGTCCTCGTCCATTACTACCCTCTCGCCGG CCGGATCATCATCACGCCGGAGGGAAAGTTCGCCGTTAACTGTTCCGGAGAAGGCGTCGTCTTCGTCGAGGCCGAGGCTAATTGCGCCTTGGAAGACTTT GACTTCTCTCGCCCGGATACGGTCACGGGCGGGAAGCTTGTGGTTTATGATGTTCCTGGCGTGGAAAACAAGTTCGACATCCCTCTGGCTGCTCAGAATC TTTTGGAACCTCCGACAATGGTGAACACTACCGATTACGAGTCCTCCAAAATTGCACTTAACGTGAAGGTAGGAGAACCAACTCTGATACCTCCGACCGA ACAAACAAAAAAGGGAATCTACTTCCTGTCGAATCTGGACGACGAACCCACAATTGTGCGAACTTTATACTGCTTCAAAAGACGAAACGAGGATGATGCT AATTGCTGTGAAGTGATGACGAATGCGCTGAGCAAAGTTCTGGTTCACTACTACCCTCTCGCCGGCCGGATGACTTTCACCGGCGACGGAAGGCGTGCGG TGGATTGCACCGGCGAGGGAGTTGTGTTTGTTGAGGCTGAGGCGGACTGTGAGCTGGATAATATTGTTGATCTCAAGAAGCTTGACGAAGGGACACGTGG CAAGCTGGTTTATGATCTTCCTGGCGCTAAGAATATGATGGATTACCCTCCTCTTATGGCTCAGGTGACCAAGTTCAAGTGTGGAGGATTTGTGCTAGGG CTAGCATTTAGCCATTTCGCGGCGGATGGTATTTCAGCAGTTGAGTTCGTCAACTCGTGGGGTGAAACTGCTCGAGGGATTCCGCTCTCGTTACCACCAT TTCACGACCGGACCTTGCTCAAGGCTCGTAACCCGCTCAAAATCGAACACCACCACTCGGAATACGGCTCGTTGCCGGACAAATCATCCCAATTCAACGG CTCAATACCCTATGAGAAAGTGGTCTACGACTTCGTCCATTTCACCCCTGTCATGATCGCTAAAATCAAGGAGGAAATATCGATGGAGAAGCAGTACTGC TCCACTTTCAAGGCCCTGACTGCATTCGTCTGGAGGGCTCGAACCGTAGCACTCAAGATGGCGCGCGACCAGCTCACGAGGGTGCTCGTGGTCGTGAACG CTAGGGACAAGTTTGAGCCTCCCTTGCCCAAAGGGTATTTTGGGAACGCAATTAAGTTCGCGCCCGCCACATGCTTGGCACGTGAACTCGTGGACGAGCC GTTGTCCTATGCGGTTGGGTTGATCCAGGACGCAATTGATAGGGTAGACGACAAACTCTTGAGATCCACCATCGATTCCTACGAACTCATGAAGGCAGAC CGCCCGCTAGGGTTTACATGTATTTCGAGCGCATGGGGTGGGTTATCATTTGGTTCAACCGATTTCGGATGGGGCGAACCTGCCGCGACTGGTCCAGTGG AGTTGCCCGTGAATGAAGGAATGTTGTTCATTCCTCATTATGAGGCGGGGAAGACGAGCATGCATGTTTATATGGGCCTGCCGGCATCAGCTATGAAGAC TTTCCAAGACTTGGTCCACCAATTTTAG
AA sequence Show only first row Show all	>Lus10032020 pacid=23161143 polypeptide=Lus10032020 locus=Lus10032020.g ID=Lus10032020.BGIv1.0 annot-version=v1.0 MVEQKHSNNGTQQNPENMFQLTVKKWNSCLVPPAAAETSDVRGNGDAGEVIKDALGKVLVHYYPLAGRIIITPEGKFAVNCSGEGVVFVEAEANCALEDF DFSRPDTVTGGKLVVYDVPGVENKFDIPLAAQNLLEPPTMVNTTDYESSKIALNVKVGEPTLIPPTEQTKKGIYFLSNLDDEPTIVRTLYCFKRRNEDDA NCCEVMTNALSKVLVHYYPLAGRMTFTGDGRRAVDCTGEGVVFVEAEADCELDNIVDLKKLDEGTRGKLVYDLPGAKNMMDYPPLMAQVTKFKCGGFVLG LAFSHFAADGISAVEFVNSWGETARGIPLSLPPFHDRTLLKARNPLKIEHHHSEYGSLPDKSSQFNGSIPYEKVVYDFVHFTPVMIAKIKEEISMEKQYC STFKALTAFVWRARTVALKMARDQLTRVLVVVNARDKFEPPLPKGYFGNAIKFAPATCLARELVDEPLSYAVGLIQDAIDRVDDKLLRSTIDSYELMKAD RPLGFTCISSAWGGLSFGSTDFGWGEPAATGPVELPVNEGMLFIPHYEAGKTSMHVYMGLPASAMKTFQDLVHQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032020 [exp]	0	1
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10008626 [exp]	1.4	0.8538
					Lus10029509 [exp]	2.0	0.8531
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035189 [exp]	2.4	0.8169
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10027881 [exp]	16.1	0.6482
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	25.0	0.7463
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	26.3	0.7412
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	26.7	0.7493
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	29.7	0.7100
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	36.3	0.7373
AT5G24080			Protein kinase superfamily pro...		Lus10027559 [exp]	36.7	0.6919

Compare expression of checked genes

Lus10032020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.