Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27430 318 / 1e-88 GYF domain-containing protein (.1) AT1G24300 315 / 2e-87 GYF domain-containing protein (.1.2) AT5G42950 96 / 2e-19 GYF domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035191 [exp] 1501 / 0 AT1G24300 329 / 8e-93 GYF domain-containing protein (.1.2) Lus10003139 [exp] 366 / 5e-104 AT1G27430 742 / 0.0 GYF domain-containing protein (.1) Lus10011331 [exp] 338 / 7e-95 AT1G27430 718 / 0.0 GYF domain-containing protein (.1) Lus10035192 [exp] 236 / 1e-71 AT1G27430 59 / 2e-10 GYF domain-containing protein (.1) Lus10032720 [exp] 144 / 5e-34 AT5G42950 1098 / 0.0 GYF domain-containing protein (.1) Lus10012078 [exp] 88 / 5e-17 AT5G42950 1100 / 0.0 GYF domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069220 [exp] 632 / 0 AT1G24300 387 / 4e-111 GYF domain-containing protein (.1.2) Potri.001G326500 [exp] 612 / 0 AT1G24300 296 / 3e-81 GYF domain-containing protein (.1.2) Potri.001G326700 [exp] 590 / 0 AT1G24300 300 / 2e-82 GYF domain-containing protein (.1.2) Potri.002G262300 [exp] 89 / 2e-17 AT5G42950 714 / 0.0 GYF domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [flax] [poplar] GYF PF02213 [flax] [poplar] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Lus10032021 pacid=23161216 polypeptide=Lus10032021 locus=Lus10032021.g ID=Lus10032021.BGIv1.0 annot-version=v1.0 ATGGCTGACGGAAAACCCAATCTGCCCGACGATCTCGTTGTTTCCTCTCACTTTTCCGACGAGGATCGTTCCCCGAACCAAGATCATGCATTCTCAGAAA GTGCCATACCTCTTTCACCACAGTGGCTCTACTCTAAACAGCTCGATGCCAAGATAGCAACTGGTGGGGCTACAGGGGAAACACGTGTGCCAAATTCGGT TGTTCATGGGAATTCTCCTGATAACAATGCCAAAGACAATTGGCGTTCAGATGGACCACAAGACAAGAAAGACTGGAGAAGAACTGCTCTGGATGCTGAT AACAGTCGTCATTGGCGCGATGAGGAAAGGGATAAAGGTCTACTTGGTAGAAGAGACCGCAAAAAAGAGGAACGGCTTGAGAGCAATAACCGTACTTCTG GGCATGAATCCCGGAGGGATGGCAAGTGGTCGTCAAGGTGGGGTCCTGAAGATAAGGAGAAGGATTCTCGGTTCGAGAAGAAAACTGACGTTGAGAAGGA CGACACTTCCACCGAGAAGCAATCGTTAATCAGCAGTCGTGCAATTGCTGAGAGAGAAAATGAGTCTCGTGATAAATGGAGGCCTCGACATCGCCTGGAA TCACATGCTGGTGGATCTGCTACATCCCGTGGTGCACCTGGATTTGGGTCAGACAAGGGACGTGCGGAAGTAGTGAGTGGGCGATTTGGCGCAGGACGAG GTAGATCTGCAAACAGTGGAAGTTTTCTACAAGGAAAGCATGATTCTGGTAATGTGATTGGGTCCCTCCCACGAGATAAGAAAAATGCTTATTGCTACCC GAGAGGAAAGCTTCTCGACATTTATCGTCAGCGCAAGCCTCTGAGCTCCGGTGGCATACCTGATGGGATGGAAGATGCATCTCATATAACACAGGAAATT GCTAACAAACCACTGGCTCTTCTTATACCTGATGCAGGGGAAGAGGAAGTCCTTGGAGACATATGGGCGGGGAGAACTACAAGCAGTGGGGACATCCAAA ATTTGTCTAGAGACAATAATGGTATATCAATTGACTGTGCTGCAGGTTCTGAGGAGGTAATAAGGGATGGTTTTCAAGGCACTTTCAGAAAGGCTGCTCC AGAAAGTTCGTATTGGAACAGTTGTAATGATGTTTCACGTCAATCATTTGATTCTGAGAGGGATGTTTCTCTAGAAGGTGAGCAAAAACTTGGAAACAAA GGGATTGGTGTGCCAGAGTATAGCTTGGACTCTGATGTCCTGAATCAGGATAAGTCCATTGGAGCACGTGGGACTGGTTCTGGGTTGGGTATTAAGGAGT TGGGATCCTCTGAATACCTGCTCGGGAAAGATATAGCTTCCCCAAAGCATAACAAGTTGGAAGACTCTGTAACTACTTTTGAAATAGGCAGCCATCTTCC TGATGATTCCAGTACTCTGTTTGACTTTCCTCGCATGCAGCAAAGCGGAAGTAATCAGTCATATATGAATATAAACTCCAAGGAAACTCCAATGGGAGAT TCTATACCACCAGAAGAGTTATCTTTATTCTATCGAGATCCACAAGGGGCAATTCAAGGACCATATCTTGGAATTGATATCATTACATGGTTCGAACAAG GCTATTTTGGGACTGATCTACCGGTTCGTTCATCAGATGCTCCTGATGAAGCACCATTTCATCAACTTGGTGAAGTGATGCCACATCTAAATGAAATACT TGTGTCTGGCTCAAGCACTAGTCTCAATGATATGTCACGACAGTCCGATGCTACTAGAAGCAATTTAGAGGGTCATCTTAACTTCAACAATTTTGGCCAT AGCAAAGAGCAGCAGTTGACCTCCTCTGGAATTGATGCTATTCCTAGTGTCAGTTCACAATCTAAAGTATCAGATTGCAACTTCAATCCTGCGGTACGGC ATTCTCTGGAGGAACGCTTTCACAATCTTGATGTTCAGGATGAAGAAATTCTCTACCCTGTCCGACCTGGTAGCAGCAGTAGTTTTACTAGACCTGGCAA TGATGCCCAGAGTTTGAATATTGCTCCTAATCAGCATTCATTTACCAACGAACCTTCTAAGCAAAGTTTGCGTAGTCATCGTGATGAAAATTTGCATCCA TTTGGTCTGTTGATGTCTGAGCTCAACAGTAACTCTGAGATGAGGAACGTTCAATCATCCAATACGACTTCAAGCATAGGGAGGGACGATCCATATCTTG ATCCAATGCTGGAGAGGAATAATGTCTCCATCCATCAAAGTCCTTTTGGTGTGGTTAACCGCCCGCCTTATGAACACTCCTGGGAGAAAGGTTCTAGCAT AAATATCCCTCCAAACCCTAGCATTAATTTTGATCCAGGTGATGCTCATCCCTTGTCACATCGGCAACAGGGGTTTAATGAATTTGACATTGACTTCTTG CAATCACGGAAGTGGCAGAATGAACAGCAAAATCAGTTTTCTCCCCATCCTCTGACTCATAATACTGGATTGGGGATTGATCAGATTCCATCACATGTAT TGGACATTCAGAGACAAATGGAGCTTGAACAGCGGCGACGTTTGGAGCTTGAACAGCACCACATGTTGGAGCTTGAACAACAGCACCTGTTGGAGCTTGA GCAGCAGCGACGGTTGGAGTTTGGGCAACAACAGCGGCTAATAGAGCTTGAACAGCAGCGCCGCCTAGAGCTTGAACAGCAGCGCCGTCTAGAGCTTGAA CAGCAGCGCCGCCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGC AGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCG AAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGG CTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGG AGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGAT TGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGCTTGAACAGCAGCAGCGACAGTTGGAGCTT CAACAGCAGCAACGCTGGCTAGAGCTTCAAAGACAACAGCAGCAACGGCTTTTGGAACTCCAACAACAGCAACAGCTGTTGGAGCTTCAAGAGCAGCAGC GTCAAGTAGAGCTTCAACAGCAGCACAAACAATTGGATATTCACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGATTGACATGCAGGATTGGTCTTGGGGATAT GCAGGAGGTGATGACCAAAACTCAAAGCAAGTGCAGGCAACAGGCAATGATTACGCACAAAGCACAACAATTTCATTCCCAGGAGCGACGATGGATTCAA ATTTAGGTTCAACAATGTCGGACGATATAGTTAAGGCATCCATGAGCAGTCAATCGGTAGAGGGGCCGAGGTTCGTTTCAAGTATTGAAGATCCTTCCCT CAGAAACACCATGGATGGCAGGTCGATTGGCAAGTCAACACTCGACTATAAAGACTTGAGAGAGCATGAAGGACAAGAGAAAATACTTGGGTCTAGAACT TCGAATGCAAGTCGGGGATCGGTCTCAGAGATTCAACAAAATTTATTTGATCAAGGTGAACCTGTGAAAGAGGTTGTGGAGCTGCAAAGTAATGCAAACA GCAGGCACAGTAGTAGACATAGCTCGTTGAGCAGTGCTGGTAAAGGTGGCAATGGAAGCTTGAGTGGGTATGAAACAGGATTAGACAGAGCAATTAGAGA AGAGGTTACTAATGTCAGAGTGCCGCCACTTCCCACCAAGGTATCTGACAATGCTCCACCAAAAGTAACACTAGTCTCGCGATCTTTATCGTCTTCCAAG GATGTCTCGTCAAACATTCCCTCTGGTCCAAGCATGAAGCTGAAGAATTCCATCAACATGGCAGCATCTAATGAAAGGAGACACAATCCTGTAGCTGGAA AGGCAACGACAACAGCCCGGCCAGTGGACGAAACTAAGGTTACTTCGGCCAAGAAAGATGTGCAGTTTAGAAGAACATCATCTTACGCAGATGCTGCATC GTCAGAGGCATCATCGTTCATGGAAGTGCTTAAGAAACCAGTTGCCCATGAACTGGATGCAGGAAATGGTAGTAACTTAGAGTCGTTTGAAGCAGGACGA AGCGGGAAGAAGAAGGGGAAAAAGGGGAGGCAGATTGATCCTGCTCTTCTTGGCTTTAAAGTCTCGAGTAACCGTATCATGATGGGTGAAATCCAGCACC CTGATGATTAA
AA sequence Show only first row Show all	>Lus10032021 pacid=23161216 polypeptide=Lus10032021 locus=Lus10032021.g ID=Lus10032021.BGIv1.0 annot-version=v1.0 MADGKPNLPDDLVVSSHFSDEDRSPNQDHAFSESAIPLSPQWLYSKQLDAKIATGGATGETRVPNSVVHGNSPDNNAKDNWRSDGPQDKKDWRRTALDAD NSRHWRDEERDKGLLGRRDRKKEERLESNNRTSGHESRRDGKWSSRWGPEDKEKDSRFEKKTDVEKDDTSTEKQSLISSRAIAERENESRDKWRPRHRLE SHAGGSATSRGAPGFGSDKGRAEVVSGRFGAGRGRSANSGSFLQGKHDSGNVIGSLPRDKKNAYCYPRGKLLDIYRQRKPLSSGGIPDGMEDASHITQEI ANKPLALLIPDAGEEEVLGDIWAGRTTSSGDIQNLSRDNNGISIDCAAGSEEVIRDGFQGTFRKAAPESSYWNSCNDVSRQSFDSERDVSLEGEQKLGNK GIGVPEYSLDSDVLNQDKSIGARGTGSGLGIKELGSSEYLLGKDIASPKHNKLEDSVTTFEIGSHLPDDSSTLFDFPRMQQSGSNQSYMNINSKETPMGD SIPPEELSLFYRDPQGAIQGPYLGIDIITWFEQGYFGTDLPVRSSDAPDEAPFHQLGEVMPHLNEILVSGSSTSLNDMSRQSDATRSNLEGHLNFNNFGH SKEQQLTSSGIDAIPSVSSQSKVSDCNFNPAVRHSLEERFHNLDVQDEEILYPVRPGSSSSFTRPGNDAQSLNIAPNQHSFTNEPSKQSLRSHRDENLHP FGLLMSELNSNSEMRNVQSSNTTSSIGRDDPYLDPMLERNNVSIHQSPFGVVNRPPYEHSWEKGSSINIPPNPSINFDPGDAHPLSHRQQGFNEFDIDFL QSRKWQNEQQNQFSPHPLTHNTGLGIDQIPSHVLDIQRQMELEQRRRLELEQHHMLELEQQHLLELEQQRRLEFGQQQRLIELEQQRRLELEQQRRLELE QQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRR LEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLELEQQQRQLEL QQQQRWLELQRQQQQRLLELQQQQQLLELQEQQRQVELQQQHKQLDIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIDMQDWSWGY AGGDDQNSKQVQATGNDYAQSTTISFPGATMDSNLGSTMSDDIVKASMSSQSVEGPRFVSSIEDPSLRNTMDGRSIGKSTLDYKDLREHEGQEKILGSRT SNASRGSVSEIQQNLFDQGEPVKEVVELQSNANSRHSSRHSSLSSAGKGGNGSLSGYETGLDRAIREEVTNVRVPPLPTKVSDNAPPKVTLVSRSLSSSK DVSSNIPSGPSMKLKNSINMAASNERRHNPVAGKATTTARPVDETKVTSAKKDVQFRRTSSYADAASSEASSFMEVLKKPVAHELDAGNGSNLESFEAGR SGKKKGKKGRQIDPALLGFKVSSNRIMMGEIQHPDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24300			GYF domain-containing protein ...		Lus10032021 [exp]	0	1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	1.7	0.9479
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	2.8	0.9407
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	5.5	0.9189
AT2G25730			unknown protein		Lus10007687 [exp]	5.7	0.9221
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	5.9	0.9175
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	6.0	0.8990
AT5G07940			unknown protein		Lus10021162 [exp]	7.4	0.9190
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10011850 [exp]	8.4	0.9095
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	8.9	0.9162
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10035661 [exp]	9.8	0.9252

Compare expression of checked genes

Lus10032021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.