Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27010 198 / 1e-61 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) AT1G69690 135 / 4e-37 TCP AtTCP15, TCP15 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) AT2G45680 135 / 5e-37 TCP TCP9 TCP family transcription factor (.1) AT5G51910 133 / 1e-36 TCP TCP19 TCP family transcription factor (.1.2) AT3G47620 133 / 3e-35 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) AT1G58100 128 / 7e-34 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2) AT1G72010 125 / 4e-33 TCP TCP22 TCP family transcription factor (.1) AT5G08330 122 / 5e-33 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1) AT5G41030 121 / 9e-33 TCP TCP6 TCP family transcription factor (.1) AT5G23280 121 / 1e-32 TCP TCP7 TCP family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035193 [exp] 327 / 2e-113 AT3G27010 156 / 6e-47 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10015760 [exp] 147 / 3e-42 AT3G27010 181 / 1e-55 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10037046 [exp] 137 / 3e-40 AT3G27010 145 / 5e-44 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10037190 [exp] 129 / 4e-34 AT1G69690 172 / 9e-50 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) Lus10010177 [exp] 121 / 7e-32 AT5G23280 186 / 1e-57 TCP family transcription factor (.1) Lus10013814 [exp] 108 / 7e-28 AT3G47620 119 / 2e-32 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10008621 [exp] 102 / 4e-25 AT3G47620 140 / 4e-38 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10041328 [exp] 91 / 3e-21 AT3G47620 93 / 3e-22 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10008444 [exp] 72 / 9e-16 AT1G58100 104 / 5e-28 TCP domain protein 8, TCP family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G327100 [exp] 228 / 4e-73 AT3G27010 230 / 6e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.017G068748 [exp] 224 / 2e-71 AT3G27010 231 / 3e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.001G060000 [exp] 192 / 3e-59 AT3G27010 215 / 2e-68 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.003G167900 [exp] 178 / 8e-54 AT3G27010 212 / 3e-67 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.014G078500 [exp] 137 / 9e-38 AT2G45680 257 / 1e-83 TCP family transcription factor (.1) Potri.011G055500 [exp] 135 / 1e-36 AT3G47620 173 / 2e-49 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.004G046300 [exp] 134 / 3e-36 AT3G47620 182 / 2e-52 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.002G152200 [exp] 132 / 1e-35 AT2G45680 286 / 6e-95 TCP family transcription factor (.1) Potri.015G138200 [exp] 132 / 2e-35 AT5G51910 230 / 1e-73 TCP family transcription factor (.1.2) Potri.012G135900 [exp] 127 / 6e-34 AT5G51910 219 / 1e-69 TCP family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10032022 pacid=23161282 polypeptide=Lus10032022 locus=Lus10032022.g ID=Lus10032022.BGIv1.0 annot-version=v1.0 ATGGATCAAAACCAGAAGTCCTCCAACTCCAAACACCATAACCCTTCTTCACCTCCTTCTTCATCATCCCACCATGACCTCCCAACTTTCCTAAACCAGC CACCTTTCCCCTCTGCTGCCACCAACATGAAGGCACCAGCAGCAGAAATCAAAGACTTCCAGATAGTAATCGCAGACCAGAAACAACAGCAGGAACAACA ACAACAACAACAACAACAACCCAATAGCAAGAAGCAGAATACTAATCAGCAGTTGGCACCAAAAAGGAGCTCAAACAAAGACAGGCACACAAAAGTGGAA GGGAGAGGGAGGAGGATAAGGATGCCTGCACTTTGCGCTGCAAGAATCTTCCAATTGACCAGAGAATTGGGCCACAAATCCGACGGCGAGACCATCCAGT GGCTTCTCCATCAAGCTGAGCCTTCAATCATTGCTGCAACTGGTACTGGTACTATTCCCGCTTCTGCCCTAGCTTCTGCAGGACCTGTACCCATTTCTTC TGGTACTGGTACTGTTAATTTTCCATCTGGGTTCCATCACAATCCAGTAAAGATTGATGATTTGAGTGGTAGGGCAACTGCTAGTGGAAATTGGGCTGGT GGGGGTGGGTTATGGCCACCTATGGGTTGTGGGTTTGGTCCGACGGTTGAGAATCCTTCTTCTTACTTGCACAAAATTGGGTTCCCTGCTGGGTTTGATG GGCATATGAGTTTTGCATCGATTTTAGGTGGGGGGACTGGTGGTGGTAGTAATAGCCAGCAGTTACCTGGGTTGGAGCTTGGGTTGTCACAGGATGGTCA TATTGGAGTTATGAATCCTCAGGCTTTGAGTCAAATTTATCAGCAGATGGGCCAAGCTAGAGTTAATCTTCAACACCATCAGAGTCAGAATCAGCAACAT CAGAGTCAGAATCAGCGGCAGGAAGCTGGGAAAGATGATTCTCCAGAGTCAGGACAGTGA
AA sequence Show only first row Show all	>Lus10032022 pacid=23161282 polypeptide=Lus10032022 locus=Lus10032022.g ID=Lus10032022.BGIv1.0 annot-version=v1.0 MDQNQKSSNSKHHNPSSPPSSSSHHDLPTFLNQPPFPSAATNMKAPAAEIKDFQIVIADQKQQQEQQQQQQQQPNSKKQNTNQQLAPKRSSNKDRHTKVE GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLHQAEPSIIAATGTGTIPASALASAGPVPISSGTGTVNFPSGFHHNPVKIDDLSGRATASGNWAG GGGLWPPMGCGFGPTVENPSSYLHKIGFPAGFDGHMSFASILGGGTGGGSNSQQLPGLELGLSQDGHIGVMNPQALSQIYQQMGQARVNLQHHQSQNQQH QSQNQRQEAGKDDSPESGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10032022 [exp]	0	1
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10035193 [exp]	1.0	0.9515
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10007320 [exp]	5.7	0.8564
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10028166 [exp]	5.9	0.8534
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	6.0	0.8763
					Lus10040816 [exp]	9.2	0.8364
AT3G43660			Vacuolar iron transporter (VIT...		Lus10031922 [exp]	12.6	0.7767
AT5G60580			RING/U-box superfamily protein...		Lus10021482 [exp]	13.0	0.8254
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	13.7	0.8432
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10017637 [exp]	14.1	0.7939
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	15.5	0.8478

Compare expression of checked genes

Lus10032022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.