Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23140 311 / 3e-99 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 246 / 8e-76 ARM repeat superfamily protein (.1) AT3G54790 204 / 8e-60 ARM repeat superfamily protein (.1.2) AT3G01400 167 / 1e-48 ARM repeat superfamily protein (.1) AT4G16490 156 / 1e-43 ARM repeat superfamily protein (.1) AT5G58680 142 / 4e-39 ARM repeat superfamily protein (.1) AT3G54850 145 / 8e-39 ATPUB14 plant U-box 14 (.1) AT3G46510 127 / 2e-32 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 125 / 7e-32 PUB15 Plant U-Box 15 (.1) AT2G28830 121 / 4e-30 AtPUB12 PLANT U-BOX 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011514 [exp] 335 / 2e-106 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 332 / 4e-105 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 316 / 2e-102 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 216 / 9e-64 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 205 / 1e-59 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 172 / 5e-51 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 170 / 5e-49 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10010499 [exp] 160 / 6e-45 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1) Lus10012260 [exp] 137 / 1e-35 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144700 [exp] 308 / 3e-98 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 303 / 3e-96 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G037700 [exp] 236 / 3e-71 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 228 / 2e-68 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.016G010800 [exp] 176 / 5e-51 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.002G118800 [exp] 167 / 7e-49 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 162 / 7e-47 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.006G015100 [exp] 164 / 3e-46 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 152 / 5e-41 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 147 / 2e-39 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10032023 pacid=23161057 polypeptide=Lus10032023 locus=Lus10032023.g ID=Lus10032023.BGIv1.0 annot-version=v1.0 ATGGAAATGGAGACTGGACATCATCATGATGATCAAGCTGAGGCTGATCCAAACAATTCACTGTGCCGGAGCCTCACGTTCCCTCTCTACTGCCCTAAAT TCCGGTCTGTATCTCAAACACAATACATTCCAGCCACTCCAAGGGCTATCAACTACCACTACTACTCTAGCGCTACGCCATCCATCTCCGACGACATCAG CTCCATCTCGTCATCCTCTTTATCTGCCGGTAGCTTCTCCTTCCCCATCGCGTCTACCCTTGATGTATCATCCCAAGTCAAGAAGTTGGTTGAAGACTTG AACAGCACTTCAATTGACACCCAAAGGGAAGCAACATGGCGACTCCGGTTCCTTGCGAAACATAACATGGACAATCGGATCGCAATAGCCAACAGCGAGG CTATTACCTTGCTGGTGAAGTTACTCCGTTCAACGGACATGATGGTGCAGGAAAATGCCGTCACAGCACTTCTCAACTTATCCGTCAACGACAACAATAA AAAGGCCATTGCTGATGCAGGAGCCATCGAGCCGTTAATTTATGTCCTCGAAACCGGGCGCCGAGACGGGAGGGATAAATCGGCTGACCGTCCGCCTATC GCGCCTGTGTGGCGGGCTGTGAAGCACCTTGTGAAGCTGATGGACCCAGCAGCCGGAATGGTGGACAAAGCAGTCGCGGTTCTAGCAAACCTCGCAACCA TCCCCGAGGGGAGCAATGCGATCGGCCAGCAAGGAGGGATCCCTGTCTTGGTCGAAGCAGTCGAGCTGGGCTCCGCGAGAACGAAAGAGAACGCAGTAGC TGCTCTTCTGCAGCTTTGCACCAACAGTATCAGGTTCTGCAACATGGTGCTCCAACAAGGTGCTGTGCCGTCATTGGTGGCATTGTTGCAGTCCGGCACA CCGAGGGCTAAAAACAAGGCGCAGTTGCTTCTTAGCTACTTCAGAAACCAAAGGCATGCTGGTAGGCAATATCATGCTCTTGGAGATCAAACATTTGATT CAAAAACCCTGTGTAAATGA
AA sequence Show only first row Show all	>Lus10032023 pacid=23161057 polypeptide=Lus10032023 locus=Lus10032023.g ID=Lus10032023.BGIv1.0 annot-version=v1.0 MEMETGHHHDDQAEADPNNSLCRSLTFPLYCPKFRSVSQTQYIPATPRAINYHYYSSATPSISDDISSISSSSLSAGSFSFPIASTLDVSSQVKKLVEDL NSTSIDTQREATWRLRFLAKHNMDNRIAIANSEAITLLVKLLRSTDMMVQENAVTALLNLSVNDNNKKAIADAGAIEPLIYVLETGRRDGRDKSADRPPI APVWRAVKHLVKLMDPAAGMVDKAVAVLANLATIPEGSNAIGQQGGIPVLVEAVELGSARTKENAVAALLQLCTNSIRFCNMVLQQGAVPSLVALLQSGT PRAKNKAQLLLSYFRNQRHAGRQYHALGDQTFDSKTLCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23140			RING/U-box superfamily protein...		Lus10032023 [exp]	0	1
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	2.4	0.9087
AT3G06240			F-box family protein (.1)		Lus10013872 [exp]	2.8	0.8682
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	2.8	0.9107
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	6.0	0.8847
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10022373 [exp]	7.5	0.8496
AT3G43660			Vacuolar iron transporter (VIT...		Lus10028596 [exp]	8.0	0.8508
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10029904 [exp]	10.4	0.8725
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	11.0	0.8753
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	11.3	0.8757
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	13.6	0.8377

Compare expression of checked genes

Lus10032023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.