Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27020 1031 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 981 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT1G65730 691 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT5G53550 658 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 651 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 648 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT3G17650 645 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 639 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT5G45450 227 / 3e-70 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035194 [exp] 1219 / 0 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1) Lus10012549 [exp] 1137 / 0 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1) Lus10041544 [exp] 1122 / 0 AT3G27020 1134 / 0.0 YELLOW STRIPE like 6 (.1) Lus10034177 [exp] 687 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1) Lus10013323 [exp] 687 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10043408 [exp] 683 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1) Lus10022360 [exp] 664 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 644 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 642 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G327300 [exp] 1050 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G150500 [exp] 716 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 707 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069200 [exp] 707 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 703 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 679 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.011G055224 [exp] 653 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.005G093800 [exp] 620 / 0 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G082400 [exp] 607 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G084400 [exp] 594 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10032024 pacid=23161258 polypeptide=Lus10032024 locus=Lus10032024.g ID=Lus10032024.BGIv1.0 annot-version=v1.0 ATGGGGAGCGAGATATCCGAATCGCTGCTACCGGAACCTGACAACGCGGCCAAGTTCGTCGGAGATCAGGTCCCCGAGTGGAAGGAGCAGATCACGATAC GAGGACTGGTTGTGAGCGCCTTGTTAGGTGGACTTTTCTGCATCATCACGCATAAGCTGAATCTCACCGTCGGAATTATTCCGTCCTTGAATGTTGCCGC CGGTCTGCTCGGCTTCTTCTTAGTCAAATCATGGACGGGATTCATGTCCAAACTTGGGTTTGACGTTGTTCCGTTTACGAAACAAGAAAATACGGTGATC CAAACCTGTGTCGTGGCTAGCTACGGCCTCGCCTTCAGCGGTGGATTCGGTTCCTACATGCTTGCTTTGGATGAGAGAACATACGAATTGATTGGTAAAG ATTATCCCGGAAATCGGGCAGAGGATGTTATGGTCATGGATTATAAGCTTACATATCCAAGTGGCACTGCTACCGCAATGTTGATCAATAGTTTCCATAC GGACAGTGGAGCTGAGCTTGCTGGGAAGCAAGTCAAGTGTCTTGGGAAGTACTTGAGCTTAAGTTTTGTTTGGAGCTGCTTCGAGTGGTTCTTCAGTGGT GTTGGTGACTCCTGTGGATTTGACAACTTCCCAAGTCTTGGTTTGACCCTTTTCAAGAATTCGTTTTACTTTGACTTCAGTCCAACTTATGTCGGATGTG GTCTTATTTGTCCGCACATTGTTAACTGCTCCTGTCTTTTTGGAGCTATCATCTCATGGGGTTTTCTGTGGCCCTACGTCTCTCAGCGTGCTGGTGACTG TTATCCAGCTGACCTCGGAAGCAATGATTTCAAGGGTCTCTATGGATATAAGGTATTCATATCGATTGCCCTTATTCTTGGGGATGGCCTTTACAATTTA GTCAAGATTATCTGGATAAGTACACTGGAAATGTTCAACAAAAGCACAAAAGAACACAAGCTTCCCGTTATCGCAGAGATTCAAGGTGCTATCGTAAATG ATGAGACTTCCAAAGTGCTACTGGAGCAGAAAACGAGAGATGCGGTATTTCTAAAAGACAGAATACCAACATGGTCTGCAGCATCCGGATATGTCTGTTT GGCCGCAATATCAACTTCGACAATGCCATTGATCTTCCACCCTCTCAAGTGGTATTTGGTTCTGGCATGCTATTTGATCGCCCCAGCTCTCGCATTCTGC AACTCTTATGGGACAGGGCTAACAGACTGGAACTTGACATCAACCTACGGGAAAATCGGACTCTTTGTCATTGCTTCCATAATCGGGCCAAACGGAGGAG TAGTTGGCGGTTTAGCAGCTTGTGGAGTGATGATGACCATTGTCTCAACAGCAGCTGATCTCATGCAGGATTTCAAGACAGGTTACCTTACGCTATCGTC AGCAAAGTCAATGTTCGTCAGCCAGTTGATCGGAACAGCTATGGGATGCGTAATCGCCCCATTAACGTTCTGGCTATTCTGGAGTGCATTTGATATCGGA TCGCCAGATGGACCGTACAAGGCCCCATATGCAGTCATATTCAGGGAAATGGCAATCCTAGGTGTGGAAGGCTTGTCCGAACTTCCGAAGCATTGTCTCG CAATATGCTGTGCCTTCTTTGTAGCTGCATTGGTGATAAACCTACTCAGAGACGTTACTCCTAAGAAGATCTCCCAGTTTATCCCTATTCCCATGGCCAT GGCGATCCCGTTCTACATCGGAGCTTACTTCGCAGTCGACATGTTCGTTGGGACGGTGATACTGTTCGTGTGGGAACGGATTAATCGGAAGGATTCAGAA GATTATGCGGGTGCAGTTGCGTCGGGGTTGATATGCGGGGATGGGATATGGACCATACCTTCGGCGATCCTGTCTCTTTTGAGGGTCAATCCTCCCATCT GTATGTACTTTGGCCCTGCTTTGAGTAGATGA
AA sequence Show only first row Show all	>Lus10032024 pacid=23161258 polypeptide=Lus10032024 locus=Lus10032024.g ID=Lus10032024.BGIv1.0 annot-version=v1.0 MGSEISESLLPEPDNAAKFVGDQVPEWKEQITIRGLVVSALLGGLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTGFMSKLGFDVVPFTKQENTVI QTCVVASYGLAFSGGFGSYMLALDERTYELIGKDYPGNRAEDVMVMDYKLTYPSGTATAMLINSFHTDSGAELAGKQVKCLGKYLSLSFVWSCFEWFFSG VGDSCGFDNFPSLGLTLFKNSFYFDFSPTYVGCGLICPHIVNCSCLFGAIISWGFLWPYVSQRAGDCYPADLGSNDFKGLYGYKVFISIALILGDGLYNL VKIIWISTLEMFNKSTKEHKLPVIAEIQGAIVNDETSKVLLEQKTRDAVFLKDRIPTWSAASGYVCLAAISTSTMPLIFHPLKWYLVLACYLIAPALAFC NSYGTGLTDWNLTSTYGKIGLFVIASIIGPNGGVVGGLAACGVMMTIVSTAADLMQDFKTGYLTLSSAKSMFVSQLIGTAMGCVIAPLTFWLFWSAFDIG SPDGPYKAPYAVIFREMAILGVEGLSELPKHCLAICCAFFVAALVINLLRDVTPKKISQFIPIPMAMAIPFYIGAYFAVDMFVGTVILFVWERINRKDSE DYAGAVASGLICGDGIWTIPSAILSLLRVNPPICMYFGPALSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10032024 [exp]	0	1
					Lus10017917 [exp]	4.2	0.9674
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	4.7	0.9657
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	5.5	0.9572
AT5G55060			unknown protein		Lus10040061 [exp]	7.1	0.9523
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10019458 [exp]	8.1	0.9519
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	8.4	0.9556
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	8.8	0.9609
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	9.8	0.9566
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	10.4	0.9574
AT5G03330			Cysteine proteinases superfami...		Lus10026525 [exp]	11.4	0.9452

Compare expression of checked genes

Lus10032024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.