Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14100 295 / 2e-100 ABCI11, ATNAP14 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) AT4G33460 76 / 1e-15 ABCI10, ATNAP13, EMB2751 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) AT1G65410 71 / 1e-13 ABCI13, TGD3, ATNAP11 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) AT1G70610 64 / 3e-11 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT5G52860 64 / 3e-11 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 63 / 7e-11 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT1G53270 62 / 9e-11 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT3G62150 60 / 8e-10 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT5G46540 60 / 9e-10 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT1G02520 60 / 1e-09 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035195 [exp] 347 / 7e-121 AT5G14100 333 / 2e-115 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10022035 [exp] 77 / 7e-18 AT5G14100 66 / 9e-15 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10026992 [exp] 72 / 7e-14 AT1G65410 476 / 2e-169 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10006209 [exp] 72 / 1e-13 AT1G70610 939 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10000827 [exp] 69 / 2e-13 AT4G33460 362 / 5e-127 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10036857 [exp] 70 / 4e-13 AT1G70610 953 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10020188 [exp] 68 / 1e-12 AT1G65410 500 / 2e-179 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10002094 [exp] 66 / 2e-12 AT4G33460 304 / 9e-105 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10004583 [exp] 65 / 2e-11 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067804 [exp] 316 / 1e-108 AT5G14100 346 / 1e-120 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Potri.014G137000 [exp] 80 / 5e-17 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.002G212701 [exp] 79 / 1e-16 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.005G062800 [exp] 77 / 2e-16 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Potri.014G113500 [exp] 65 / 2e-11 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.018G132000 [exp] 63 / 3e-11 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.001G354900 [exp] 63 / 7e-11 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.007G004800 [exp] 63 / 8e-11 AT3G55100 266 / 5e-79 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) Potri.014G113000 [exp] 63 / 1e-10 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 61 / 4e-10 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10032025 pacid=23161320 polypeptide=Lus10032025 locus=Lus10032025.g ID=Lus10032025.BGIv1.0 annot-version=v1.0 ATGCCGGCTGGGAATAAATGCAAAAGAATAGAAGCGGGAATTAAAGGGATGGGCCGAAAGTGGAGAGCCCGCCTCGCATTTTTAAATCAGGTTAGAAATG TTAGTTATAGACCTCCTGGGACACAGCTCAACCTCTTGAACGATGTCAGTTTTTCTCTCCCGGAAAAGAGCCTTGGCTTGATTTTTGGGCAGAGTGGAAG TGGAAAAATTACTCTCCTGCAGCTTCTTGCAGGGTTGAACAAGCCTACTTCTGGTAGCATTTGCATCCAAAGATATGGGAGTGATGGCAGTCCGAGTCAT TCTCCGGAGCTTCTTTGTCCTGAAAGAGTCGGTATAGTCTTTCAATTTCCTGAGAGGTATTTTGTGACTGATACCATCCTGGATGAAGTAACATTTGGAT GGCCTAGGCAAAAAAGCACTCTTCAAGTGAGGGAGCAGCTTCTTTTAAATCTTCAGAGGGCTATTAACTGGGTTGGTCTGAATGGAATATCTTTGGATAA AGATCCTCAGTCTCTGAGTGGTGGATACAAGCGCAGACTTGCTCTGGCAATTCAATTAGTACAAGTACCAGATTTACTGATACTGGATGAGCCACTTGCT GGTCTTGATTGGAAACCTCGGGCAGATGTTGTAAAGCTCTTAAAGCAGCTGAAGAAAGAATTAACTGTGTTGGTAGTCAGCCATGACCTCAACCATTTGA GCAGCTCGAGGAATGCTGATGCCATCTTAGCCACAGGACAGGCGCCGCTATATTGGACGAATCAGCGCTGGAATTGCCAAACTGAATGGGATAACTATGA AATCCCCATAAAAGGAGGTCAGATAGTGAAGATAATACGTGTGGCATGGCTTCCGCGGAAGGGCCTGTTTTTCTGCTGA
AA sequence Show only first row Show all	>Lus10032025 pacid=23161320 polypeptide=Lus10032025 locus=Lus10032025.g ID=Lus10032025.BGIv1.0 annot-version=v1.0 MPAGNKCKRIEAGIKGMGRKWRARLAFLNQVRNVSYRPPGTQLNLLNDVSFSLPEKSLGLIFGQSGSGKITLLQLLAGLNKPTSGSICIQRYGSDGSPSH SPELLCPERVGIVFQFPERYFVTDTILDEVTFGWPRQKSTLQVREQLLLNLQRAINWVGLNGISLDKDPQSLSGGYKRRLALAIQLVQVPDLLILDEPLA GLDWKPRADVVKLLKQLKKELTVLVVSHDLNHLSSSRNADAILATGQAPLYWTNQRWNCQTEWDNYEIPIKGGQIVKIIRVAWLPRKGLFFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14100		ABCI11, ATNAP14	ARABIDOPSIS THALIANANON-INTRIN...		Lus10032025 [exp]	0	1
AT1G36730			Translation initiation factor ...		Lus10010980 [exp]	8.2	0.8472
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	11.8	0.8717
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	12.2	0.8611
AT1G26900			Pentatricopeptide repeat (PPR)...		Lus10037193 [exp]	13.2	0.7910
AT5G27830			unknown protein		Lus10020660 [exp]	17.9	0.8541
AT5G59460			scarecrow-like transcription f...		Lus10004969 [exp]	20.7	0.8541
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10025915 [exp]	21.2	0.8186
AT1G76200			unknown protein		Lus10012279 [exp]	23.2	0.8391
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10009289 [exp]	23.8	0.8197
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	23.9	0.8594

Compare expression of checked genes

Lus10032025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.