Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12320 434 / 4e-148 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 434 / 6e-148 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12330 391 / 4e-131 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 391 / 5e-131 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 381 / 3e-127 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 361 / 3e-119 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 359 / 3e-118 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 316 / 4e-102 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45560 283 / 2e-89 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 262 / 3e-81 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032215 [exp] 843 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 743 / 0 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 718 / 0 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 714 / 0 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 688 / 0 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032211 [exp] 683 / 0 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032213 [exp] 682 / 0 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10035196 [exp] 634 / 0 AT4G12300 308 / 7e-101 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024580 [exp] 621 / 0 AT4G12310 344 / 2e-114 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 548 / 0 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G118500 [exp] 474 / 2e-163 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.003G114400 [exp] 466 / 2e-160 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 451 / 5e-154 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G113900 [exp] 308 / 6e-99 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.013G073300 [exp] 307 / 2e-98 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 301 / 6e-96 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 296 / 9e-95 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.005G037201 [exp] 295 / 9e-94 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037100 [exp] 295 / 1e-93 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032026 pacid=23161053 polypeptide=Lus10032026 locus=Lus10032026.g ID=Lus10032026.BGIv1.0 annot-version=v1.0 ATGGAGCTCCACAGCGGCGATTCGAGAGCTGTCGCGGTAGCAGCAGCTCTAGTCATCGTCACAGCATCGATCATGGCGTTATGGTTACTGAAGAGAGCAT CCAACAATAAATCATTGCCACCGGGGCCCCGTGGGTTGCCAATAGTAGGGTACCTGCCATTTCTCAGCAGCCATCTACACAAGAGCTTCACTGAGCTGGC CGAAACCTACGGCCCAGTCTACAAGCTCTGGCTCGGGTACAAGATGTATGTGGTGGTTGGCTCACCGTTGCTGGCTAAAGAGGTTCGTGACCAGGACATA ACTTTTGGAGCTCGAGATCCTCCGATTGCTGCGAAGATAATCACCCACGGTGGGAATGACATCGCCTTCACATCCTACGGCTCCGACTGGAAGAAGCTGC GGAAGATCTTTGTGCGCGAGTTGTTGAGCAATGCGAGACTAGACGGTTCTTATGTGCTGAGGAAGCAACAAGTTGAGTGGGCTGTTAAGAATGTGTACCT GAAGAGAGGTAAAGCTTTGGACTTTGGCCGGTTGGTGTTCATGACGGTGTCAAACACTGTCCTGAGCATGCTCTTGGGAAGCACGATCAATGGGGAAGAA GGGGAAATGTTTTTTGCCAAGATTAAGAAATTGTCAGGTGAAGTGATGGTGCTGATTGCAGCACCAAACATCTCGGACCTCATTCCTGCACTTGCCAGGT TTGACTTGCAGGGGATCGAGAAGAAATCCAGGAAGCTGCAGCAGGAATTCAATCAACTTCTCAATTCTGTGATCAGCGAGCGGAGGAAGCTGGTTTCATA TTTGAGAGATGGCGAATTCAAAGATGCCAAGGACTTCTTGCAGATTCTCCTAGATCTCAACAGTAGCAATGGAGGAGATGCTGCATTATCAATTACAGAC AGTCAACTCAAGGGCATTCTTCAAGATACGATTATCGGCGGAACAGACACTACAGCAACGGCGATAGAGTGGACAATGGCAATGTTGATGCAACATCCAG ACGCAATGCAAAAGGTCTGCAAAGAACTAGATGAAGTAGTAGGAAGAAGAAGCATTGTGGAAGAGTTACATCTGCCGCAACTACACTACTTGGATGCAGT GATTAAGGAAACATTCCGCCTGCATCCACCACTGCCCATGCTGGTTCCGCGTTGCCCCAGCCAGGACTGCAAACTAGGCGGGTACACCATTCCAAAGGGT GTCACTGTATTCATTAACGCTTATGCAATCCACAGGGATCCACAGCTCTGGACCAACCCTCTGGAATTCAGACCCGGCAGGTTCCTAGAGGAGAATAATA CTGCAAGCAACTTGGACTACGTGGGCAACAGTTGCCAGTACTTCCCATTTGGAACAGGAAGGAGAGTCTGTGCAGGGCTTCCAATGGCGGAGAAGATGCT GAAATACGTTCTTGCTTCGCTGCTCCACTCATTTGAATGGAAGCTAGCACAGGGGACAGAGGTGGATTTGACAGATAAGTTTGGAATCGTCGTCAAGTTG GAGAAACCGCTAATTGTTGTCCCTACACCAAAGCTAGCCAATCCAGATCTTTACTAG
AA sequence Show only first row Show all	>Lus10032026 pacid=23161053 polypeptide=Lus10032026 locus=Lus10032026.g ID=Lus10032026.BGIv1.0 annot-version=v1.0 MELHSGDSRAVAVAAALVIVTASIMALWLLKRASNNKSLPPGPRGLPIVGYLPFLSSHLHKSFTELAETYGPVYKLWLGYKMYVVVGSPLLAKEVRDQDI TFGARDPPIAAKIITHGGNDIAFTSYGSDWKKLRKIFVRELLSNARLDGSYVLRKQQVEWAVKNVYLKRGKALDFGRLVFMTVSNTVLSMLLGSTINGEE GEMFFAKIKKLSGEVMVLIAAPNISDLIPALARFDLQGIEKKSRKLQQEFNQLLNSVISERRKLVSYLRDGEFKDAKDFLQILLDLNSSNGGDAALSITD SQLKGILQDTIIGGTDTTATAIEWTMAMLMQHPDAMQKVCKELDEVVGRRSIVEELHLPQLHYLDAVIKETFRLHPPLPMLVPRCPSQDCKLGGYTIPKG VTVFINAYAIHRDPQLWTNPLEFRPGRFLEENNTASNLDYVGNSCQYFPFGTGRRVCAGLPMAEKMLKYVLASLLHSFEWKLAQGTEVDLTDKFGIVVKL EKPLIVVPTPKLANPDLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032026 [exp]	0	1
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Lus10026863 [exp]	1.0	0.9688
AT1G24130			Transducin/WD40 repeat-like su...		Lus10029206 [exp]	2.2	0.9312
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	2.4	0.9379
AT5G37450			Leucine-rich repeat protein ki...		Lus10002278 [exp]	3.2	0.9262
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	9.2	0.9295
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	10.6	0.9283
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	11.0	0.9283
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	11.0	0.9378
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10030330 [exp]	13.3	0.9080
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	13.4	0.9320

Compare expression of checked genes

Lus10032026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.