Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40980 84 / 5e-22 Protein of unknown function (DUF 3339) (.1) AT3G27027 83 / 6e-22 Protein of unknown function (DUF 3339) (.1) AT3G48660 74 / 3e-18 Protein of unknown function (DUF 3339) (.1) AT5G63500 71 / 5e-17 Protein of unknown function (DUF 3339) (.1) AT5G08391 65 / 8e-15 Protein of unknown function (DUF 3339) (.1) AT5G14110 63 / 4e-14 Protein of unknown function (DUF 3339) (.1) AT3G27030 64 / 2e-13 unknown protein AT3G01950 61 / 3e-13 Protein of unknown function (DUF 3339) (.1) AT3G01940 59 / 2e-12 Protein of unknown function (DUF 3339) (.1) AT5G40970 55 / 8e-11 Protein of unknown function (DUF 3339) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032030 [exp] 144 / 6e-46 AT3G27030 106 / 2e-31 unknown protein Lus10035199 [exp] 129 / 3e-40 AT3G27030 108 / 4e-32 unknown protein Lus10012543 [exp] 85 / 2e-22 ND 100 / 2e-29 Lus10041550 [exp] 84 / 3e-21 AT3G27030 122 / 8e-37 unknown protein Lus10012542 [exp] 79 / 2e-20 AT3G27030 113 / 3e-34 unknown protein Lus10041551 [exp] 77 / 3e-19 AT3G27030 113 / 3e-34 unknown protein Lus10037036 [exp] 76 / 8e-19 AT3G48660 112 / 3e-34 Protein of unknown function (DUF 3339) (.1) Lus10015769 [exp] 75 / 2e-18 AT3G48660 112 / 1e-34 Protein of unknown function (DUF 3339) (.1) Lus10011353 [exp] 74 / 2e-18 AT3G48660 122 / 1e-38 Protein of unknown function (DUF 3339) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G328701 [exp] 83 / 5e-21 AT3G27027 115 / 7e-35 Protein of unknown function (DUF 3339) (.1) Potri.017G064500 [exp] 79 / 5e-20 AT3G27030 111 / 2e-33 unknown protein Potri.003G170400 [exp] 75 / 1e-18 AT3G48660 89 / 3e-25 Protein of unknown function (DUF 3339) (.1) Potri.017G064972 [exp] 73 / 7e-18 AT3G27027 108 / 3e-33 Protein of unknown function (DUF 3339) (.1) Potri.001G329000 [exp] 69 / 2e-16 AT5G08391 113 / 5e-35 Protein of unknown function (DUF 3339) (.1) Potri.015G098300 [exp] 69 / 2e-16 AT3G48660 107 / 3e-32 Protein of unknown function (DUF 3339) (.1) Potri.001G058001 [exp] 69 / 5e-16 AT3G48660 74 / 9e-19 Protein of unknown function (DUF 3339) (.1) Potri.001G057900 [exp] 67 / 8e-16 AT5G08391 113 / 6e-35 Protein of unknown function (DUF 3339) (.1) Potri.017G064301 [exp] 67 / 1e-15 AT5G08391 108 / 5e-33 Protein of unknown function (DUF 3339) (.1) Potri.003G170500 [exp] 67 / 2e-15 AT5G08391 112 / 9e-35 Protein of unknown function (DUF 3339) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11820 [flax] [poplar] DUF3339 Protein of unknown function (DUF3339)
Representative CDS sequence Show only first row Show all	>Lus10032029 pacid=23161213 polypeptide=Lus10032029 locus=Lus10032029.g ID=Lus10032029.BGIv1.0 annot-version=v1.0 ATGGTGGGTGCAGATTGGGGACCGGTGATCATCGCGGTAGGCTTGTTCATCCTCTTATCGCCTGGCTTGCTATTCCAGCTACCTGCAAGAACAAGAGTGG TGGAGTTTGGGAACCTCAACACGAGCGGGATAGCGATTCTGCTAGCCAGTGTAGACGTGGACACGAACAGCCAAGATGAGAATGGCATAGACAGTGAAGA ATATGAGAGTGTGAACCGCGATGGATTTCCCGTTGGTCTTCAAGCTTCCAAACTCGATCTGTCTGCTGTGCCCTGGGAACTGAAACAAGAGTCCTGGCGT GAGCAGGATGAACAAGACTACCCCTATCAAGATTGGACCCCAGTCAGTCATTGGAAGGATAAAGGATCAAAAGAAAGCTTGGAAAGTGGAGGAAATGGTG GGGGGAGGAGAAGAGAGGAAATTGCTATAGCTTAA
AA sequence Show only first row Show all	>Lus10032029 pacid=23161213 polypeptide=Lus10032029 locus=Lus10032029.g ID=Lus10032029.BGIv1.0 annot-version=v1.0 MVGADWGPVIIAVGLFILLSPGLLFQLPARTRVVEFGNLNTSGIAILLASVDVDTNSQDENGIDSEEYESVNRDGFPVGLQASKLDLSAVPWELKQESWR EQDEQDYPYQDWTPVSHWKDKGSKESLESGGNGGGRRREEIAIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	0	1
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	2.8	0.8369
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	4.2	0.8191
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	6.0	0.7813
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	6.9	0.7610
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10016402 [exp]	11.0	0.7626
AT2G25760			Protein kinase family protein ...		Lus10038275 [exp]	12.8	0.7279
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	14.8	0.7810
					Lus10035412 [exp]	18.7	0.7828
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10010138 [exp]	18.7	0.7062
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	19.0	0.7491

Compare expression of checked genes

Lus10032029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.