Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01930 798 / 0 Major facilitator superfamily protein (.1.2) AT5G14120 780 / 0 Major facilitator superfamily protein (.1) AT5G50520 504 / 6e-174 Major facilitator superfamily protein (.1) AT5G50630 504 / 6e-174 Major facilitator superfamily protein (.1) AT2G28120 322 / 2e-102 Major facilitator superfamily protein (.1) AT2G39210 305 / 6e-96 Major facilitator superfamily protein (.1) AT4G34950 303 / 2e-95 Major facilitator superfamily protein (.1) AT1G80530 295 / 2e-92 Major facilitator superfamily protein (.1) AT2G16660 281 / 2e-87 Major facilitator superfamily protein (.1) AT2G34350 139 / 4e-35 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035203 [exp] 1082 / 0 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025123 [exp] 577 / 0 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10023961 [exp] 520 / 1e-179 AT5G14120 598 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 310 / 4e-98 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 303 / 2e-95 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 298 / 2e-93 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 292 / 8e-91 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 290 / 4e-90 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 288 / 1e-89 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G329100 [exp] 862 / 0 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 857 / 0 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G098900 [exp] 721 / 0 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 317 / 1e-100 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 313 / 2e-99 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 307 / 3e-97 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 307 / 5e-97 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 302 / 5e-95 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 299 / 7e-94 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 298 / 2e-93 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10032034 pacid=23161138 polypeptide=Lus10032034 locus=Lus10032034.g ID=Lus10032034.BGIv1.0 annot-version=v1.0 ATGGGGAAGATACAGGACAGGCTGACGGATTTCTTCAACAACAGATGGCTGGTGTTCGTGGCCGCAATGTGGATACAGTCCTGGGCTGGAATCGGCTACC TCTTCGGAAGCATTTCCCCTGTCATCAAGAGCTCCCTTGGTTACAATCAGAGGCAGCTCGCCAGTCTGGGAGTTGCTAAGGATCTTGGGGACAGCGTAGG GTTCTTGACTGGCAGTCTATGCGAAATCTTGCCCCTTTGGGGAGCTCTGTTAGTCGGTTCGTTCCAGAATCTTATCGGGTATGGTTGGGTTTGGCTCATC GTCACTGGTCGCACCCCTGCTTTGCCTCTCTGGGCCATGTGCGTTCTGATATTTATTGGGAACAATGGAGAAACATACTTCAACACTGTTGCATTGGTTT CTTGCGTGCAAAACTTCCCAAAGAGCCGGGGACCGGTCGTGGGAATACTGAAAGGATTTGCCGGCTTAAGTGGAGCGATCTTGACGCAGATATACACGAT GATCCATTCCCCCGATCATGCATCTCTCATCTTCATGGTTGCAGTTGGACCCGGAATCATAGTCATTTCTCTCATGTTCTTCATCAGACCAGTCGGAGGT CACAGGCAAATCAGACCGTCGGATGGCACGAGCTTCTCATTTGTCTACAGCGTGTGCATTCTTCTAGCTGCTTATTTGATGGCAGTCATGCTTCTCGAAG ATCTAGTCCCGTTGAACAAAACCATAGTCATGACTTTCACCGGTGTCTTGTTCGTCCTCCTTGCGATCCCGATTGTGATTCCGATATGGTTAAGTTTCTT CTCCCCCGACCGGAACAATCTGGTAGAAGAAGCAGCTCTACTTCTTCCACAGGAGCAGAAAGGAGAAGGGAGTAAATCGGATGAACAGGACGGTCATGAA GTGATATTGAGCGAGGTGGAAGACGAGAAGCCTAAGGAAATGGACCTACTTCCGGCATCGGAGAGGCATAAGAGAATCGCGCAGTTGCAAGCAAAACTGT TTCATGCAGCTGCGGCAGGGGCGGTGAGGGTGAAGAGGAGGAGAGGTCCTCATAGAGGAGAGGACTTTACTTTGGGGCAGGCATTGATCAAGGCTGACTT TTGGCTCATCTTCTTTTCGCTTTTGTTAGGTTCCGGATCCGGGTTGACCATCATTGATAATCTCGGTCAGTTGAGTTACTCTCTTGGATATGATAATACC CATGTCTTTGTGTCCATGATCAGCATATGGAACTTCCTCGGTCGTGTTGGTGGCGGTTACATCTCCGAGGTGGTCGTCAGGGATTATGCTTATCCAAGAC CAGTAACAATGGCGGTTGCCCAGTTTGTGATGGCATTTGGACATATCTTCTTTGCTTTCGATTGGCCTGGGGCAATGTACGTTGGCACATTGTTGATAGG GCTTGGCTACGGATCACATTGGGCAATTGTCCCAGCTACTGCATCCGAGTTATTTGGTCTTAAGAAGTTTGGAGCCCTCTACAATTTCCTTACACTAGCA AACCCAGCAGGCTCTCTCGTCTTCTCCGGTGTTATCGCAAGTGGCATATACGACCGCGAAGCTGAAAAGCAAGCCGGAATCCACAATTCGAATTTCCGGA TGTTCTCGAACTTCTTTGGTGCCGAGGATACACTGAAGTGTGAAGGCTCCGTGTGTTACTTCCTCACTTGCATGATCATGTCAGGATTCTGTGTAATTGC TGGTATCTTGAGCTTGATACTCGTTCATCGCACCAAGGTTGTCTACACAAACCTCTATGGAAAAACGCGTGTTTGA
AA sequence Show only first row Show all	>Lus10032034 pacid=23161138 polypeptide=Lus10032034 locus=Lus10032034.g ID=Lus10032034.BGIv1.0 annot-version=v1.0 MGKIQDRLTDFFNNRWLVFVAAMWIQSWAGIGYLFGSISPVIKSSLGYNQRQLASLGVAKDLGDSVGFLTGSLCEILPLWGALLVGSFQNLIGYGWVWLI VTGRTPALPLWAMCVLIFIGNNGETYFNTVALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPDHASLIFMVAVGPGIIVISLMFFIRPVGG HRQIRPSDGTSFSFVYSVCILLAAYLMAVMLLEDLVPLNKTIVMTFTGVLFVLLAIPIVIPIWLSFFSPDRNNLVEEAALLLPQEQKGEGSKSDEQDGHE VILSEVEDEKPKEMDLLPASERHKRIAQLQAKLFHAAAAGAVRVKRRRGPHRGEDFTLGQALIKADFWLIFFSLLLGSGSGLTIIDNLGQLSYSLGYDNT HVFVSMISIWNFLGRVGGGYISEVVVRDYAYPRPVTMAVAQFVMAFGHIFFAFDWPGAMYVGTLLIGLGYGSHWAIVPATASELFGLKKFGALYNFLTLA NPAGSLVFSGVIASGIYDREAEKQAGIHNSNFRMFSNFFGAEDTLKCEGSVCYFLTCMIMSGFCVIAGILSLILVHRTKVVYTNLYGKTRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01930			Major facilitator superfamily ...		Lus10032034 [exp]	0	1
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	8.1	0.7075
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	12.1	0.6591
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	13.6	0.6924
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10019688 [exp]	14.1	0.6783
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	19.4	0.6403
AT3G55140			Pectin lyase-like superfamily ...		Lus10025290 [exp]	19.9	0.6441
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10030303 [exp]	21.5	0.6304
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	22.6	0.6484
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10031582 [exp]	24.0	0.6120
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011008 [exp]	26.5	0.6606

Compare expression of checked genes

Lus10032034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.