Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67400 355 / 1e-122 RHS19 root hair specific 19 (.1) AT4G37530 342 / 2e-117 Peroxidase superfamily protein (.1.2) AT4G37520 334 / 2e-114 Peroxidase superfamily protein (.1.2) AT3G49960 330 / 1e-112 Peroxidase superfamily protein (.1) AT5G14130 325 / 5e-111 Peroxidase superfamily protein (.1) AT4G30170 317 / 6e-108 Peroxidase family protein (.1) AT2G18980 315 / 8e-107 Peroxidase superfamily protein (.1) AT4G17690 244 / 4e-79 Peroxidase superfamily protein (.1) AT5G47000 241 / 8e-78 Peroxidase superfamily protein (.1) AT5G40150 223 / 6e-71 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012540 [exp] 435 / 5e-154 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10035204 [exp] 369 / 6e-129 AT5G67400 270 / 5e-90 root hair specific 19 (.1) Lus10011079 [exp] 328 / 8e-112 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10001442 [exp] 319 / 3e-108 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10039445 [exp] 230 / 2e-73 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10010716 [exp] 224 / 2e-71 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10013955 [exp] 226 / 1e-70 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10042144 [exp] 223 / 1e-70 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10004234 [exp] 222 / 2e-70 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G064100 [exp] 419 / 4e-148 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G329200 [exp] 407 / 2e-143 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.018G089900 [exp] 338 / 5e-116 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.007G053400 [exp] 332 / 1e-113 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.007G074700 [exp] 261 / 1e-85 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 224 / 3e-71 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 221 / 3e-70 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 221 / 3e-70 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.018G015500 [exp] 220 / 1e-69 AT2G24800 416 / 2e-146 Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 219 / 5e-69 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10032035 pacid=23161066 polypeptide=Lus10032035 locus=Lus10032035.g ID=Lus10032035.BGIv1.0 annot-version=v1.0 ATGGGTTACTTCAGTTCCTCTACGGCGGCCATGATTATGATCATCGTGGCAATTACCATCGCCGGCGGCGGCGGCGTGTCGGGACAAGGACTGAGGGAGA ATTTCTACGCGGGAAGTTGTCCTATGGTGGAGGCGGTAGTACAGCAAGTGGTGGCGGCCAAAGCCGGCCGGCAGTTTCCCACCCTGCCAGCCACTCTCCG CCTCTTCTTCCACGATTGCTTCGTTACTGGCTGCGATGCCTCAGTAATGGTGGCATCACCAAACGGAGACGCGGAGAAAGATGCTCCGGACAATCTTTCC CTGGCCGGCGACGGATTCGACGCCGTATCAAGAGCTAAAACAGCTGTAGAAGCTATATGCCCTGGAGTCGTTTCTTGTGCAGATATCATCGCCATCGCAG CTCGTGATGTCGTTGCCTTGGCAGGAGGCCCGACGTTCGCGGTGGAATTAGGGCGGAGGGACGGCATGATATCCAGCGCATCCCTCGTCGCCGGAAACTT GCCGGAGCCAAACATGACCTTACCCGAACTCAACGCAATATTCGCCAAACACAACCTCACCCAATTCGACATGATCGCACTTTCGGGAGCTCACACGCTC GGCTTCTCCCACTGCAATCGCTTCTTCGATCGCATCTACTCTTCCACAGTCGACCCTTCCCTGAACTCCACCTACGCCCAGGAGCTGATGACGGCATGCC CGAGGGACGTGGATCCCAGCATCGCAATCGACATGGATCCGACAACTCCGAGGGCATTCGACAATGTGTATTACCAGAATCTGGTGGAGGGGAAGGGGAT GTTTAGTTCCGACCAGGTTCTGTTCACGGACGGGAGGTCTCGGGCGACGGTGGTGGATTTCGCGAGGAGTGCTGCGGATTTTAACGGTGGGTTTGCGGCG GCGATGAGGAAGCTTGGGAGAGTTGGGGTTAAGACTGGGAGTCAGGGGAGGATTCGGAGTGACTGTTCGAATGTGAACTCTTAG
AA sequence Show only first row Show all	>Lus10032035 pacid=23161066 polypeptide=Lus10032035 locus=Lus10032035.g ID=Lus10032035.BGIv1.0 annot-version=v1.0 MGYFSSSTAAMIMIIVAITIAGGGGVSGQGLRENFYAGSCPMVEAVVQQVVAAKAGRQFPTLPATLRLFFHDCFVTGCDASVMVASPNGDAEKDAPDNLS LAGDGFDAVSRAKTAVEAICPGVVSCADIIAIAARDVVALAGGPTFAVELGRRDGMISSASLVAGNLPEPNMTLPELNAIFAKHNLTQFDMIALSGAHTL GFSHCNRFFDRIYSSTVDPSLNSTYAQELMTACPRDVDPSIAIDMDPTTPRAFDNVYYQNLVEGKGMFSSDQVLFTDGRSRATVVDFARSAADFNGGFAA AMRKLGRVGVKTGSQGRIRSDCSNVNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10032035 [exp]	0	1
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	4.5	0.9375
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	5.2	0.9413
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	5.5	0.9338
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	6.2	0.9360
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039348 [exp]	10.0	0.9344
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10011930 [exp]	10.3	0.9049
AT5G23160			unknown protein		Lus10010194 [exp]	11.7	0.9333
AT1G66880			Protein kinase superfamily pro...		Lus10009151 [exp]	12.0	0.9246
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	12.8	0.9284
AT2G19460			Protein of unknown function (D...		Lus10027629 [exp]	14.0	0.9190

Compare expression of checked genes

Lus10032035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.