Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14140 288 / 1e-96 C2H2ZnF zinc ion binding;nucleic acid binding;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035205 [exp] 468 / 8e-168 AT5G14140 267 / 4e-90 zinc ion binding;nucleic acid binding;zinc ion binding (.1) Lus10000130 [exp] 372 / 8e-131 AT5G14140 216 / 9e-71 zinc ion binding;nucleic acid binding;zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G329300 [exp] 309 / 3e-105 AT5G14140 311 / 2e-107 zinc ion binding;nucleic acid binding;zinc ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032036 pacid=23161299 polypeptide=Lus10032036 locus=Lus10032036.g ID=Lus10032036.BGIv1.0 annot-version=v1.0 ATGAAAGGCCTTAAATGTACAGTTTCCGGGCCTTCTGAGGAGGCCCAATATCTCAATGCTCTGCGACAAGATAGCCTTTACGAATATTATGGGATTTATT CATTCCAGTATCAACCCAAAGAGAGACGGTCTAACGGTAAAGTTCATCGGTCATACAAAACAGCACGTTCTAACTTTCACAAATCCAGGGAAAATTGCTC AACCGTTCGCCTTTTGAAATTCCTGAATCAAGAAGATCAACTGACCTCCAAAGTTCTACAAATTTGTCTTCTCGCCGGAGATCATTTAGCCGTGGCGATG ATGGTGGTCGACGTAGATCCCAAATCCGAATACGGATTCCCTTACTGGAACCCCGTCCGCCGTCGCTTCTCGCCGGAGTCTCCTTTCTTCGAGTCCGGCA ACATCGAGCGCGAGCTTCTTGCCAAACAGATTGCCCTGGATTTAGGTGAAGATCAGAAGCAATTGTTAAGTTCAATGGATGAAGATGCCGAGGTGATGTT TTGTCCAATCGCTGGGTGTCGTGCGCCATTGTCAACAATGGGGTTTGAAAACCACTATATATCGCAGCATACTGCAGCCTGTTCCGTATGCCATAGAGCA TACCCAACCTCGCGCTTGCTCAGCCTGCACATCTCTGAAGCACATGATTCCTTCTTCAAGGCAAAAGTTGCACGTGGTTACCCCATGTACGAATGCTTGG TGGAAGGTTGCGGCTTAAAATTCAAGAGTTACAAAAGCAGGCAGAAGCACTTGGTGGACAAGCATAAATTCCCAGCTTCATACGATTTCTTCAAGAAGGG TCACCATCTATCCAAGAAAGCCAGAGAAAAGATCCATCGCAATAAAACCACGACAACAACAACCCGCAAAAACGACGAGGAAGGATCGAGCAAAATGGAA GCAGATGAAGAAGTCGAGAATCTCACTTCAGCACTGTCCAAAATGACCACCGGTTCAACTCCTAAGTCTGTATCCTTCGGTCGAGGCAACGCTCGTGGAC TCGCGTTCGTCCCTCGATCTGTCCAGCGTGACGTCAAGAAGCCAGATCCGACCCCACGCCCATAG
AA sequence Show only first row Show all	>Lus10032036 pacid=23161299 polypeptide=Lus10032036 locus=Lus10032036.g ID=Lus10032036.BGIv1.0 annot-version=v1.0 MKGLKCTVSGPSEEAQYLNALRQDSLYEYYGIYSFQYQPKERRSNGKVHRSYKTARSNFHKSRENCSTVRLLKFLNQEDQLTSKVLQICLLAGDHLAVAM MVVDVDPKSEYGFPYWNPVRRRFSPESPFFESGNIERELLAKQIALDLGEDQKQLLSSMDEDAEVMFCPIAGCRAPLSTMGFENHYISQHTAACSVCHRA YPTSRLLSLHISEAHDSFFKAKVARGYPMYECLVEGCGLKFKSYKSRQKHLVDKHKFPASYDFFKKGHHLSKKAREKIHRNKTTTTTTRKNDEEGSSKME ADEEVENLTSALSKMTTGSTPKSVSFGRGNARGLAFVPRSVQRDVKKPDPTPRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14140	C2H2ZnF		zinc ion binding;nucleic acid ...		Lus10032036 [exp]	0	1
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10034784 [exp]	5.7	0.8799
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	8.7	0.8549
AT5G18260			RING/U-box superfamily protein...		Lus10020256 [exp]	12.2	0.8329
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10042387 [exp]	18.1	0.8434
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	24.5	0.8126
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	25.0	0.8366
AT1G11240			unknown protein		Lus10011247 [exp]	26.4	0.8348
AT3G19910			RING/U-box superfamily protein...		Lus10017385 [exp]	30.4	0.8341
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	31.9	0.8421
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	49.4	0.8196

Compare expression of checked genes

Lus10032036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.