Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 94 / 2e-22 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035359 [exp] 97 / 4e-26 AT3G48560 219 / 3e-69 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032041 [exp] 97 / 5e-24 AT3G48560 565 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 97 / 1e-23 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 95 / 6e-23 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022446 [exp] 94 / 7e-23 AT3G48560 702 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10016751 [exp] 94 / 2e-22 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035206 [exp] 45 / 1e-06 AT5G50460 127 / 1e-40 secE/sec61-gamma protein transport protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098300 [exp] 95 / 7e-23 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.015G097200 [exp] 95 / 7e-23 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
Representative CDS sequence Show only first row Show all	>Lus10032037 pacid=23161253 polypeptide=Lus10032037 locus=Lus10032037.g ID=Lus10032037.BGIv1.0 annot-version=v1.0 ATGAATGTTCAAGAGCTCGCAACAGTTCGAGTGGAGAACTTGCCAGTGAAGATCATGATACTCAACAATCAGCAGTTGGGGATGGTGGTTCAGTGGGAAG ATAAGTTTTACAAGGCCAACAGAGCACATACTTTCCTCGGCACAGAGTTTCTTTCGGGATGGATGCTGCTGAAAGAATCACCAGAAAACTATTATCCCGA GTCCCCCCTGCATCCCTACGATGATATTGGAGCTTACCTTGCAAATCTAACCAGATCCTACGATGATGTTATTGATGGGGATGAAGATGAGCTTGACGAA GAACCCTACGAATCCCATCACCACGAAACCTATCGCCGTACGCACTGCCACCTTCGAAAACTCTGCCAGATCACCAAATCAATGAGCACACTGAGTCAAC ACACAGATCGGCGGAGTTTCCCCAAAATCGCATCGGAAGTTTCAGAAACGAAGAATCAGCGAAAGGAAACAGAGATTTACCTTTCCGATCTGGCTTGTGG CAGCGCTTCACAAGTCTTACACTGTCCTTGGCGAATTCCCTGA
AA sequence Show only first row Show all	>Lus10032037 pacid=23161253 polypeptide=Lus10032037 locus=Lus10032037.g ID=Lus10032037.BGIv1.0 annot-version=v1.0 MNVQELATVRVENLPVKIMILNNQQLGMVVQWEDKFYKANRAHTFLGTEFLSGWMLLKESPENYYPESPLHPYDDIGAYLANLTRSYDDVIDGDEDELDE EPYESHHHETYRRTHCHLRKLCQITKSMSTLSQHTDRRSFPKIASEVSETKNQRKETEIYLSDLACGSASQVLHCPWRIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032037 [exp]	0	1
					Lus10007802 [exp]	2.4	0.9382
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	2.4	0.9461
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10026653 [exp]	4.9	0.9149
AT1G47710			Serine protease inhibitor (SER...		Lus10034362 [exp]	5.0	0.8811
AT5G36930			Disease resistance protein (TI...		Lus10033825 [exp]	5.5	0.8916
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	5.7	0.9345
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	6.0	0.9235
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Lus10011421 [exp]	7.1	0.8494
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	8.1	0.9211
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	8.4	0.9137

Compare expression of checked genes

Lus10032037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.