Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 155 / 3e-45 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G55430 146 / 5e-42 O-Glycosyl hydrolases family 17 protein (.1) AT2G39640 141 / 1e-39 glycosyl hydrolase family 17 protein (.1) AT3G46570 129 / 3e-36 Glycosyl hydrolase superfamily protein (.1) AT5G42720 127 / 6e-35 Glycosyl hydrolase family 17 protein (.1) AT2G16230 121 / 2e-32 O-Glycosyl hydrolases family 17 protein (.1) AT1G32860 118 / 1e-31 Glycosyl hydrolase superfamily protein (.1) AT1G30080 116 / 7e-31 Glycosyl hydrolase superfamily protein (.1) AT4G34480 116 / 2e-30 O-Glycosyl hydrolases family 17 protein (.1) AT4G18340 113 / 6e-30 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021088 [exp] 280 / 6e-95 AT5G24318 324 / 3e-108 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 196 / 8e-61 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 196 / 4e-60 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 193 / 2e-59 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10005166 [exp] 162 / 2e-47 AT5G24318 385 / 1e-129 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 137 / 3e-38 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10023245 [exp] 136 / 6e-38 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004869 [exp] 127 / 5e-35 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 127 / 6e-35 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240000 [exp] 176 / 6e-53 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.012G017800 [exp] 150 / 2e-43 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G056000 [exp] 149 / 4e-43 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 141 / 7e-40 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G203800 [exp] 140 / 1e-39 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183000 [exp] 135 / 5e-39 AT5G42720 331 / 4e-112 Glycosyl hydrolase family 17 protein (.1) Potri.014G182500 [exp] 134 / 2e-37 AT2G16230 504 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184900 [exp] 134 / 2e-37 AT2G16230 498 / 2e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182000 [exp] 134 / 4e-37 AT2G16230 506 / 2e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182321 [exp] 134 / 4e-37 AT2G16230 506 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10032038 pacid=23161055 polypeptide=Lus10032038 locus=Lus10032038.g ID=Lus10032038.BGIv1.0 annot-version=v1.0 ATGGCGAAAATCTCCACCTTCCTCCTCTGCCTCTGCCTTACGATCACCCAATCCCCCGCCCACTCCATCGGAGTAAACTACGGCACCAACGCCGACAACC TCCCACCCCACGCCAAAGTAGCCACCTTTCTAAAATCCCACACTATCATCGACCGAGTCAAAATCAACGACACCAATCCAGACATCCTCCGCGGATTCGC CAACACAGGGATCTCCGTCGCCGTCGCAATTCCCAGAGAAGAAATCCCATCCCTCGCCAATCTCCCCGCCGCCAAATCATGGGTCGCCAAGCACATCACC CCATTCTACCCCAAAACCAAATTCAACTACATCCTCGTCGGAAACGAGGTCTTCTTCTGGAACGAAACTAACGTCATCAGGAAACTCGTCCCTGCAATGA AGGCCCTGACCAAGGCACTGGAGCTGGCGAATCTAGCGGCCCACATCAAGGTCTCCTCCCTTCATGGGCTTCAATTCATCGAGCCCACCCAGCCGCCAAG CTCGGCCCAGTTTCAGAACTACGCGAGCCCTGTTCTCCGCAAGGCGTTGGAATTCCACCTCCGTACGGGACTCCGTTCCTGGTGA
AA sequence Show only first row Show all	>Lus10032038 pacid=23161055 polypeptide=Lus10032038 locus=Lus10032038.g ID=Lus10032038.BGIv1.0 annot-version=v1.0 MAKISTFLLCLCLTITQSPAHSIGVNYGTNADNLPPHAKVATFLKSHTIIDRVKINDTNPDILRGFANTGISVAVAIPREEIPSLANLPAAKSWVAKHIT PFYPKTKFNYILVGNEVFFWNETNVIRKLVPAMKALTKALELANLAAHIKVSSLHGLQFIEPTQPPSSAQFQNYASPVLRKALEFHLRTGLRSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10032038 [exp]	0	1
					Lus10037775 [exp]	1.0	0.9199
AT3G46570			Glycosyl hydrolase superfamily...		Lus10032039 [exp]	2.0	0.8799
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031151 [exp]	5.5	0.8882
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	9.7	0.8892
AT5G35370			S-locus lectin protein kinase ...		Lus10028067 [exp]	13.2	0.8042
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	17.2	0.8770
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	20.4	0.8686
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	20.8	0.8765
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	22.4	0.8363
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	22.8	0.8378

Compare expression of checked genes

Lus10032038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.