Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 266 / 3e-85 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G17380 69 / 2e-13 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01320 56 / 7e-09 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 55 / 1e-08 PDC3 pyruvate decarboxylase-3 (.1) AT5G54960 53 / 6e-08 PDC2 pyruvate decarboxylase-2 (.1) AT4G33070 51 / 2e-07 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029955 [exp] 298 / 2e-97 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 264 / 2e-89 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10016751 [exp] 267 / 9e-86 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 102 / 7e-25 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10028503 [exp] 60 / 3e-10 AT5G17380 916 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10009141 [exp] 60 / 4e-10 AT5G17380 908 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10002217 [exp] 54 / 4e-08 AT5G54960 1061 / 0.0 pyruvate decarboxylase-2 (.1) Lus10003384 [exp] 53 / 7e-08 AT5G54960 1068 / 0.0 pyruvate decarboxylase-2 (.1) Lus10005048 [exp] 50 / 4e-07 AT5G54960 1067 / 0.0 pyruvate decarboxylase-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097200 [exp] 262 / 6e-84 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.012G098300 [exp] 261 / 2e-83 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.004G094600 [exp] 69 / 3e-13 AT5G17380 904 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.017G151900 [exp] 53 / 4e-08 AT5G01320 959 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.016G120100 [exp] 52 / 1e-07 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 50 / 6e-07 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 49 / 1e-06 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.006G102500 [exp] 47 / 4e-06 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Representative CDS sequence Show only first row Show all	>Lus10032040 pacid=23161124 polypeptide=Lus10032040 locus=Lus10032040.g ID=Lus10032040.BGIv1.0 annot-version=v1.0 ATGGCGACTGTCCCTTCCACTACTGCTGTTCCGAATCGCTCCTTCTTCTCCAAACAGACCTCCCCCGACAACCTCCTCCTTCTCCGCCGCCGTAACCTCT GCCTCTCCCCAGCCGCCGTCTCCTCCTCCGGCCCCCTCCACCACCATCACAACAACAAATCCCCAATTCCACCTTCCGCCACCGCCACCACCGCCATTAC CATTTCCACCACTGCTCCTTCCGTTGCTCCCTCCGACACCACCACCACCTACCATTCCCGCTTCGCCACCGACCGGCCAAGAAAGGGCGCGGACGTCCTC GTCGAAGCCCTAGAACGCGAGGGCGTCAACCACGTCTTTGCCTACCCAGGTGGTGCTTCGTTAGAGATCCACCAGGCGCTCACTCGCTCCAAAACCATCA AGAACATCCTCCCCCGCCACGAGCAAGGCGGAGTGTTCGCCGCCGAGGGCTACGCACGCTCCTCCGGGCGTGTCGGCGTCTGCATCGCCACCTCCGGCCC CGGAGCCACCAATCTTGTCAGCGGCCTCGCCGACGCCATGCTCGACAGCATCCCTATCGTCGCCATCACAGGACAGGTCCCCCGCCGGATGATTGGGACA GACGCTTTCCAGGAAACTCCGATCGTGGAGGTGACGAAATCGATCACCAAGCACAATTACCTCGTCGACGACGTGGAGGAAATCCCTTGA
AA sequence Show only first row Show all	>Lus10032040 pacid=23161124 polypeptide=Lus10032040 locus=Lus10032040.g ID=Lus10032040.BGIv1.0 annot-version=v1.0 MATVPSTTAVPNRSFFSKQTSPDNLLLLRRRNLCLSPAAVSSSGPLHHHHNNKSPIPPSATATTAITISTTAPSVAPSDTTTTYHSRFATDRPRKGADVL VEALEREGVNHVFAYPGGASLEIHQALTRSKTIKNILPRHEQGGVFAAEGYARSSGRVGVCIATSGPGATNLVSGLADAMLDSIPIVAITGQVPRRMIGT DAFQETPIVEVTKSITKHNYLVDDVEEIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032040 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032041 [exp]	1.0	0.9485
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10007755 [exp]	2.0	0.8587
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10003317 [exp]	6.9	0.8131
AT5G07700	MYB	ATMYB76	myb domain protein 76 (.1)		Lus10019085 [exp]	11.0	0.7824
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	12.2	0.7906
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	17.3	0.7749
					Lus10002962 [exp]	20.1	0.7083
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	28.2	0.7251
AT5G58530			Glutaredoxin family protein (....		Lus10017438 [exp]	34.1	0.7598
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Lus10013489 [exp]	38.1	0.7778

Compare expression of checked genes

Lus10032040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.