Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 533 / 0 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035207 [exp] 656 / 0 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 581 / 0 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10016751 [exp] 528 / 0 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022446 [exp] 528 / 0 AT3G48560 702 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035359 [exp] 231 / 2e-76 AT3G48560 219 / 3e-69 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032037 [exp] 97 / 1e-23 AT3G48560 96 / 3e-23 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098300 [exp] 538 / 0 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.015G097200 [exp] 532 / 0 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10032041 pacid=23161191 polypeptide=Lus10032041 locus=Lus10032041.g ID=Lus10032041.BGIv1.0 annot-version=v1.0 ATGGGGTTAGGAAGTTTCCCTTGCGATCACGAGCTTTCCCTTCATATGCTGGGAATGCACGGGACTATGTACGCCAATTACGGTATCGACAGGGCTGATT TGCTTCTTGCCTTCGGTGTTCGATTCGACGATCGTGCTACTGGAAAAGTCGAGACGTTTGCTAGTCGAGCTACGATTGTTCATATCGATATTGATTCGGC CGAGATCGGGAAGAACAAGCTGCCTCAAGTGTCGATGTGTGCTGATTTGAAGCCGGCATTGGAAGGGATGAACAGGCTGTTGCTGGAAGAAGAGAAGATT CAAAATCTGGATTTGGATTTCTCCGATTGGAGGAATGAGATTCAGGAGCAGAAGCTGAAGTATCCGTTAAGCTACAAGATATTCGGGGAAGCGATTCCTC CGCAGTACGCAATCAAACTGCTTGACGAATTGACACAAGGGAATGCAATTATCAGTACTGGAGTCGGGCAGCATCAAATGTGGGCAGCTCAGTTCTACAA GTACAAAAAGCCACGCCAGTGGCTAACATCTGCAGGGCTAGGTGCAATGGGGTTCGGGCTACCAGCAGCGATCGGGGCAGCGGTGGCCAACCCGGGGGCT GTGGTAGTCGACATCGATGGAGACGGGAGTTTCATGATGAATCTTCAGGAGCTGGCGACGATCAGGGTGGAGAACTTGCCAGTGAAGATAATGATACTGA ACAATCAGCATTTGGGGATGGTGGTTCAGTGGGAAGACAGGTTTTACAAGGCCAACAGGGCGCATACGTTCTTGGGGAATCCGGAGAATGAAGGGGAGAT TTTTCCGGACATGTTGAGGTTTGCTGAAGGCTGTGGGATACCCGCGGCGAGGGTGACTAGGATCGGCGAGCTTAGGGAAGGGATGAAGAAGATGTTGGAG ACTCCGGGACCGTATCTGTTGGATGTGATGGTGCCTCATCAGGAACATGTTCTGCCGATGATTCCGAGCGGCGGAGCTTTTAAGGATGTTATTACTGAAG GAGATGGCAGAGCTTGGTCTTAG
AA sequence Show only first row Show all	>Lus10032041 pacid=23161191 polypeptide=Lus10032041 locus=Lus10032041.g ID=Lus10032041.BGIv1.0 annot-version=v1.0 MGLGSFPCDHELSLHMLGMHGTMYANYGIDRADLLLAFGVRFDDRATGKVETFASRATIVHIDIDSAEIGKNKLPQVSMCADLKPALEGMNRLLLEEEKI QNLDLDFSDWRNEIQEQKLKYPLSYKIFGEAIPPQYAIKLLDELTQGNAIISTGVGQHQMWAAQFYKYKKPRQWLTSAGLGAMGFGLPAAIGAAVANPGA VVVDIDGDGSFMMNLQELATIRVENLPVKIMILNNQHLGMVVQWEDRFYKANRAHTFLGNPENEGEIFPDMLRFAEGCGIPAARVTRIGELREGMKKMLE TPGPYLLDVMVPHQEHVLPMIPSGGAFKDVITEGDGRAWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032041 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032040 [exp]	1.0	0.9485
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10007755 [exp]	1.4	0.8648
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	6.9	0.8158
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035207 [exp]	8.8	0.7615
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10004182 [exp]	10.6	0.7461
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	11.5	0.7877
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Lus10013489 [exp]	11.6	0.8171
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10003317 [exp]	12.8	0.7932
AT5G50360			unknown protein		Lus10038406 [exp]	16.4	0.7675
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008713 [exp]	18.7	0.6671

Compare expression of checked genes

Lus10032041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.