Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27050 64 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035208 [exp] 81 / 1e-12 AT3G27050 215 / 2e-71 unknown protein Lus10010600 [exp] 51 / 1e-08 AT3G27050 61 / 8e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G329600 [exp] 65 / 9e-14 AT3G27050 231 / 3e-78 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032042 pacid=23161267 polypeptide=Lus10032042 locus=Lus10032042.g ID=Lus10032042.BGIv1.0 annot-version=v1.0 ATGGCTTCACAATTGCAAAGCTCAGGGATGCTGTCCAGGGAGCAGTTGCTTTACCTGTTCAATCGCTTCTCTGAACTCACTGCCCAACCTGTGAAGAGAT GGCTTGTGACGAGGCTGAACTTGGACCAGAAGAATTTTCTGATAAAATGCATAATCAAGAAAAGCTTCATGAGAAGGCAAGTTTCTTCAGATATTAATCT GGGTACCGGATGTTCATTCAAGAATGCTGTTAAACAGATCAAATGTACTGGAGATTTCTTTTTTGCAGCAACTGGAGATGCTAAAGTGCATCAAAATCTG GAGAAGGCCAATTTCGACGCAGAGGCATCGGTGCTGCCATCAAACGAGATTGAAGAAACTGTACGAAGGAGGGTGTCCCCTTTATTCATGCCGGCCAACT AA
AA sequence Show only first row Show all	>Lus10032042 pacid=23161267 polypeptide=Lus10032042 locus=Lus10032042.g ID=Lus10032042.BGIv1.0 annot-version=v1.0 MASQLQSSGMLSREQLLYLFNRFSELTAQPVKRWLVTRLNLDQKNFLIKCIIKKSFMRRQVSSDINLGTGCSFKNAVKQIKCTGDFFFAATGDAKVHQNL EKANFDAEASVLPSNEIEETVRRRVSPLFMPAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27050			unknown protein		Lus10032042 [exp]	0	1
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10005589 [exp]	3.0	0.8411
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009662 [exp]	3.5	0.8511
AT3G61790			Protein with RING/U-box and TR...		Lus10002761 [exp]	3.9	0.8453
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	4.1	0.8597
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Lus10035876 [exp]	5.3	0.8250
AT4G14385			unknown protein		Lus10011821 [exp]	6.0	0.8452
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	7.2	0.8565
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10016096 [exp]	8.1	0.8542
AT5G36930			Disease resistance protein (TI...		Lus10026961 [exp]	10.2	0.8446
AT3G52420		ATOEP7	outer envelope membrane protei...		Lus10003733 [exp]	11.5	0.8448

Compare expression of checked genes

Lus10032042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.