Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27060 529 / 0 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) AT3G23580 478 / 6e-171 RNR2A ribonucleotide reductase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035209 [exp] 646 / 0 AT3G27060 562 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Lus10004435 [exp] 482 / 3e-172 AT3G23580 556 / 0.0 ribonucleotide reductase 2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063900 [exp] 572 / 0 AT3G27060 561 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Potri.001G329700 [exp] 566 / 0 AT3G27060 557 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Potri.008G201500 [exp] 480 / 1e-171 AT3G23580 576 / 0.0 ribonucleotide reductase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF00268 [flax] [poplar] Ribonuc_red_sm Ribonucleotide reductase, small chain
Representative CDS sequence Show only first row Show all	>Lus10032043 pacid=23161105 polypeptide=Lus10032043 locus=Lus10032043.g ID=Lus10032043.BGIv1.0 annot-version=v1.0 ATGCCTTCTATCCCAGAAGAGCCTCTCCTCGCCTCCAACCCAGACCGATTCTGCATGTTCCCAATCGAATACCCTCAGATCTGGGAGATGTACAAGAAAG CCGAGGCCTCCTTCTGGACAGCCGAGGAGGTAGATCTCTCTCAGGACGTTCGCCACTGGGACGCCTTAACTGCCGACGAGCGCCACTTCATCACGCACGT CCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCCTTGAGAATCTCGCCGGCAGGTTCATGAAGGAGGTCCAGGTGGCCGAGGCGCGTGCCTTCTACGGC TTCCAGATCGCGATGGAGACCATCCACTCCGAGATGTACAGCCTCCTGCTCGAGACCTACATCAAGGATTCGAAAGAAAAAAGCCGTCTGTTCCGTGCAA TCGACACGATTCCTTGCGTGGCGAAGAAGGCGCAGTGGGCGTTGAAATGGATCGACGGCGGGGAGTGCTTTGCCGAGAGGCTGATTGCGTTCGCCTGCGT TGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATTTTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGAGCTGATCTCGCGA GACGAAGGCCTGCACTGTGATTTCGCCTGCTTGCTGTACGGGATGATGAAGATGAAGCCCAGCGAGGAGCGCGTAAAAGGGATTGTCCGCGATGCGGTGG ATATCGAGAGAGAGTTTGTCTGTGACGCGCTCCCTTGCGCGTTGGTTGGGATGAATGGGGTGCTGATGAGTCAGTACATTGAGTTTGTAGCCGATAGGTT GCTGGACTCTCTTGGCTACAGCAAAATCTACAATGTGACGAACCCATTTGATTGGATGGAGCTTATCTCGTTGCAAGGGAAGACTAATTTCTTCGAGAAG AGAGTCGGAGAGTATCAGAAGGCATCTGTGATGTCAAGCTTGAACGGTGGCAATGTTGGGAACCATGAGTTCAAAATGGACGAAGACTTTTAG
AA sequence Show only first row Show all	>Lus10032043 pacid=23161105 polypeptide=Lus10032043 locus=Lus10032043.g ID=Lus10032043.BGIv1.0 annot-version=v1.0 MPSIPEEPLLASNPDRFCMFPIEYPQIWEMYKKAEASFWTAEEVDLSQDVRHWDALTADERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYG FQIAMETIHSEMYSLLLETYIKDSKEKSRLFRAIDTIPCVAKKAQWALKWIDGGECFAERLIAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISR DEGLHCDFACLLYGMMKMKPSEERVKGIVRDAVDIEREFVCDALPCALVGMNGVLMSQYIEFVADRLLDSLGYSKIYNVTNPFDWMELISLQGKTNFFEK RVGEYQKASVMSSLNGGNVGNHEFKMDEDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10032043 [exp]	0	1
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10037747 [exp]	5.1	0.8227
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	10.7	0.8199
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	23.3	0.8104
AT1G14810			semialdehyde dehydrogenase fam...		Lus10013239 [exp]	25.7	0.7753
AT5G54970			unknown protein		Lus10043108 [exp]	29.8	0.8141
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	37.9	0.8057
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041010 [exp]	38.9	0.7312
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	39.0	0.8040
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10039016 [exp]	45.5	0.7493
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10004640 [exp]	49.1	0.7935

Compare expression of checked genes

Lus10032043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.