Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27110 486 / 8e-174 Peptidase family M48 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035210 [exp] 623 / 0 AT3G27110 493 / 4e-176 Peptidase family M48 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330800 [exp] 498 / 1e-178 AT3G27110 498 / 2e-178 Peptidase family M48 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01435 [flax] [poplar] Peptidase_M48 Peptidase family M48
Representative CDS sequence Show only first row Show all	>Lus10032044 pacid=23161184 polypeptide=Lus10032044 locus=Lus10032044.g ID=Lus10032044.BGIv1.0 annot-version=v1.0 ATGGCCGCGCTGCTTCCTTATTACTCTTCCTGCTTCTCCCAAAGAAGATCGCTCTGTTTGTCGTCGTCCCCTCATCCTCTCGGTTTCTGCTATGGGGTCA CGGATTTGTCCAAGGTCAGCTCTGTTTCCAGTCGGGGAATGGTCTCGGAGAAGAAGGTGAACAATCGATGTGTTGCTAGGGTTTCTGTTCGTGGAGTGGA TTCTTCTTCTTCCGTTGTATTTCGTGATCTCGACGCCGATGATTTCAGGCATCCTCTCGATAAACAGAACACACTTCTGCTGAGGGCGATTCCAGGATTG AATGAAATCGGAAAGGCTTTATTAGGAAGCTTATCAGAGCAAATTATGCTTCTCGAGAATATTGGAACCTCAGTTCTTGTCTCAGAAAATCAGCTTTCAG AACTTCATCAACTGATGACAGAGGCTGCGCAGATACTAAATGTTGAGGCTCCTGATCTTTATGTCCGGCAAAGTCCTGTCCCAAATGCCTATACTTTAGC TATAAGCGGGAAGAAGCCGTTTGTCGTTGTGCACACCAGCCTAGTGGAGCTTCTTACAAGAAAAGAGTTGCAGGCTGTTTTGGCTCATGAGTTAGGACAT CTAAAGTGTGATCATGGTGTATGGCTCACATTTGCAAATATACTTACTCTTGGAGCTTATACTGTGCCTGGAATCGGTAGTATGATAGCTCAGACATTAG AAGAACAGTTGTTTCGCTGGATCCGAGCAGCTGAGCTAACATGTGACCGTGCAGCACTTCTTGTTGCTCAAGACCCTAAGGTCGTCGTCTCTCTGTTGAT GAAATTATGTGGTGGAAGCCCGTCGATTGCTGATCAACTCAATGTAGATGCGTTTCTGGAACAAGCACGTTCTTATGACAGAGCATCATCGAGTCCGATA GGATGGTACATCAGAAATGCTCAGACAAGGCAACTTTCACATCCTCTGCCTGTTCTGCGTGCTCGTGAGATTGATGAATGGTCAAGAAGCCCAGAGTACA AGAAGCTTCTGAAACGTGCAATGGGGCAGAAAACCTAG
AA sequence Show only first row Show all	>Lus10032044 pacid=23161184 polypeptide=Lus10032044 locus=Lus10032044.g ID=Lus10032044.BGIv1.0 annot-version=v1.0 MAALLPYYSSCFSQRRSLCLSSSPHPLGFCYGVTDLSKVSSVSSRGMVSEKKVNNRCVARVSVRGVDSSSSVVFRDLDADDFRHPLDKQNTLLLRAIPGL NEIGKALLGSLSEQIMLLENIGTSVLVSENQLSELHQLMTEAAQILNVEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGH LKCDHGVWLTFANILTLGAYTVPGIGSMIAQTLEEQLFRWIRAAELTCDRAALLVAQDPKVVVSLLMKLCGGSPSIADQLNVDAFLEQARSYDRASSSPI GWYIRNAQTRQLSHPLPVLRAREIDEWSRSPEYKKLLKRAMGQKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	0	1
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	1.0	0.9472
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	1.4	0.9172
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10018803 [exp]	2.8	0.8530
AT5G61670			unknown protein		Lus10016713 [exp]	3.0	0.9002
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	3.5	0.8617
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10009190 [exp]	5.7	0.7858
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	6.6	0.8818
AT3G09470			Major facilitator superfamily ...		Lus10003979 [exp]	7.5	0.7633
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10028580 [exp]	7.7	0.8370
AT3G10130			SOUL heme-binding family prote...		Lus10022712 [exp]	8.1	0.8779

Compare expression of checked genes

Lus10032044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.