Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27080 201 / 4e-65 TOM20-3 translocase of outer membrane 20 kDa subunit 3 (.1) AT1G27390 194 / 1e-62 TOM20-2 translocase outer membrane 20-2 (.1) AT5G40930 176 / 1e-55 TOM20-4 translocase of outer membrane 20-4 (.1) AT3G27070 169 / 5e-53 TOM20-1 translocase outer membrane 20-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035211 [exp] 427 / 4e-154 AT3G27080 210 / 1e-68 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10012532 [exp] 273 / 7e-87 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10011363 [exp] 144 / 1e-42 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10006419 [exp] 142 / 4e-42 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10041558 [exp] 110 / 3e-30 AT3G27080 83 / 5e-20 translocase of outer membrane 20 kDa subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330200 [exp] 242 / 3e-81 AT1G27390 215 / 3e-71 translocase outer membrane 20-2 (.1) Potri.001G054900 [exp] 223 / 6e-74 AT1G27390 230 / 4e-77 translocase outer membrane 20-2 (.1) Potri.003G173400 [exp] 211 / 2e-69 AT3G27080 208 / 2e-68 translocase of outer membrane 20 kDa subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06552 [flax] [poplar] TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence Show only first row Show all	>Lus10032045 pacid=23161195 polypeptide=Lus10032045 locus=Lus10032045.g ID=Lus10032045.BGIv1.0 annot-version=v1.0 ATGGACATGTCGAGCGATTTGGACAGGATGCTCTTCTTCGAGCACGCTCGTAAAACAGCTGAGGCTACCTATGCTACCAACCCGCTGGATGCCGAGTTCT GGGGTTATTCATTTGTTACTGCGGTGTCTAGCTTTCTAGTGCTTGAATTTGAACTTTATGGTGATTTCCGGGGTCAGAACTTGACGAGATGGGGTGGATC TCTGATGGAGCTGGCTCAGTTTCAGAGTGTTCCAGATGCGAAGAAGATGATTCTAGATGGAATTTCCAAGTTAGATGAGGCATTGTCGATAAATCCCATG AAGCATGATGCTCTCTGGTGTCTGGGAAATGCTAATACATCTTATGCATTCTTAACCCCCAGCGAGGAGGAAGCAGATGCATATTTCAAAAAAGCAACTG TCTACTTTCAACAAGCTGTTGTTGAGGATCCAAGCAATGAGTTGTATGCCAAGTCTCTAGAAGTGGCTGCTAAGGCACCAGAATTGCACTCAGAGATTCA TAAGCGTGGTATGTTGGACCAACAAGCATTAGGTGGTGGACCGGCACCTGGACCTTCTGCCCCAATGGCCAAAAAGACCGCAAAGAAGGAGAAGATCAGC GATTCCACGTACGACGCATTAGGATGGGTTATTCTTGCGGTAGGGATTTTTGCAATGTTGGGACTCGCAAAATCCCAGATGCCTCCAGTTCCCCCACCTG CCCGGTAA
AA sequence Show only first row Show all	>Lus10032045 pacid=23161195 polypeptide=Lus10032045 locus=Lus10032045.g ID=Lus10032045.BGIv1.0 annot-version=v1.0 MDMSSDLDRMLFFEHARKTAEATYATNPLDAEFWGYSFVTAVSSFLVLEFELYGDFRGQNLTRWGGSLMELAQFQSVPDAKKMILDGISKLDEALSINPM KHDALWCLGNANTSYAFLTPSEEEADAYFKKATVYFQQAVVEDPSNELYAKSLEVAAKAPELHSEIHKRGMLDQQALGGGPAPGPSAPMAKKTAKKEKIS DSTYDALGWVILAVGIFAMLGLAKSQMPPVPPPAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10032045 [exp]	0	1
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	6.1	0.9353
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	8.2	0.9305
AT3G15000			cobalt ion binding (.1)		Lus10043130 [exp]	9.2	0.9226
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	10.9	0.9164
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	12.5	0.9304
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10003996 [exp]	14.7	0.9106
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10003487 [exp]	16.5	0.9011
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	18.3	0.9198
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	25.1	0.9122
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	26.6	0.9178

Compare expression of checked genes

Lus10032045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.