Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01920 376 / 1e-131 DHBP synthase RibB-like alpha/beta domain (.1) AT5G60590 41 / 0.0005 DHBP synthase RibB-like alpha/beta domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037409 [exp] 43 / 0.0001 AT5G60590 314 / 7e-108 DHBP synthase RibB-like alpha/beta domain (.1.2) Lus10041302 [exp] 42 / 0.0003 AT5G60590 311 / 2e-106 DHBP synthase RibB-like alpha/beta domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330100 [exp] 427 / 1e-151 AT3G01920 430 / 1e-152 DHBP synthase RibB-like alpha/beta domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01300 [flax] [poplar] Sua5_yciO_yrdC Telomere recombination
Representative CDS sequence Show only first row Show all	>Lus10032046 pacid=23161067 polypeptide=Lus10032046 locus=Lus10032046.g ID=Lus10032046.BGIv1.0 annot-version=v1.0 ATGCAAGAGACGAAGATCATCAGAGCTGGGAACAATTTTCCCGCGGTTTCCTTACCGTCACCTCGGCTTTGTCCTTCTCCGTTCCCGGCGACCGGTGTTT CGTTTCTCGCCTCCAAACCTGCTATGCGTTTCCGTGTCTTAGCCATGGCTGTCAAGCGAAGCCCTAAGCGACTCAAATATGCCGCTCCTCGCTTCTCCAA GGAAGGAGAGCTGGTTTATGTTGAAGCTGATCCTGATGGAGAGGACATTTGGAAATTGGAGCCGATCGTTGAGCTTTTGAAGGAAGGCGCCGTTGGAGTT ATTCCGACTGATACTGTGTATGCTATAGTTTGTGATTTGAAGAGCCAGTCAGCCATGGAACGACTTCGGAGGTACCAATTCTCCCCCAGTTATGGAGGAC TTCTACGTCTACTTATAGTGCAGCCACTCAGTATCTTATGCCACTCTCTGAGAGATATTGACACCTACACAACTGGTTTCCCCCGCGGTGGTGGTGGAGG ACAGGCAAATATCTTCCGAGAAGTTAAGCATTGCTTACCTGGGCCGTACACGTTTATATTGACTGCAAGCAAAGAGTTGCCAAAGCAATGTATGAGGTAT GGAACTACAACTCCGAAATATGCTGCTAGGAAGAATGTGGGTGTCAGGATTCCCGATGATGCAATTTGCCGGGCAATACTTGAAAAGCTGGATGCGCCAT TGATTTCTACAAGCGTCAAGGGCCTCAAGAAAGACCAGTGGTTACTGGATCCTGTCGTTATAGCTGATGCATATGGGCCAGAGGGGCTTGATTTTGTAGT TGATGGTGGTCTGAGAGTGGCTGATCCTTCCACTGTGGTTGACATGACCGGAACGCCCCCAAAAATCATACGTCAAGGGAAGGGACCTAAACTGCACTGG ATGGTATCAGAAGATGAAGATGAATAA
AA sequence Show only first row Show all	>Lus10032046 pacid=23161067 polypeptide=Lus10032046 locus=Lus10032046.g ID=Lus10032046.BGIv1.0 annot-version=v1.0 MQETKIIRAGNNFPAVSLPSPRLCPSPFPATGVSFLASKPAMRFRVLAMAVKRSPKRLKYAAPRFSKEGELVYVEADPDGEDIWKLEPIVELLKEGAVGV IPTDTVYAIVCDLKSQSAMERLRRYQFSPSYGGLLRLLIVQPLSILCHSLRDIDTYTTGFPRGGGGGQANIFREVKHCLPGPYTFILTASKELPKQCMRY GTTTPKYAARKNVGVRIPDDAICRAILEKLDAPLISTSVKGLKKDQWLLDPVVIADAYGPEGLDFVVDGGLRVADPSTVVDMTGTPPKIIRQGKGPKLHW MVSEDEDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01920			DHBP synthase RibB-like alpha/...		Lus10032046 [exp]	0	1
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	11.8	0.8020
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	16.1	0.7603
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	34.0	0.7455
AT5G59400			unknown protein		Lus10040799 [exp]	34.3	0.7530
AT4G38960	CO		B-box type zinc finger family ...		Lus10018076 [exp]	35.0	0.6952
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	35.6	0.7590
AT5G38600			Proline-rich spliceosome-assoc...		Lus10034080 [exp]	36.1	0.7548
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10015118 [exp]	42.5	0.7346
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10013576 [exp]	45.4	0.7108
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005368 [exp]	50.5	0.6636

Compare expression of checked genes

Lus10032046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.