Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48200 386 / 6e-116 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035212 [exp] 1935 / 0 AT3G48200 476 / 3e-149 unknown protein Lus10039976 [exp] 393 / 1e-118 AT3G48200 1074 / 0.0 unknown protein Lus10008827 [exp] 344 / 8e-102 AT3G48200 925 / 0.0 unknown protein Lus10002461 [exp] 216 / 1e-61 AT3G48200 425 / 1e-139 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330000 [exp] 989 / 0 AT3G48200 492 / 3e-155 unknown protein Potri.015G079000 [exp] 434 / 4e-134 AT3G48200 1134 / 0.0 unknown protein Potri.012G087400 [exp] 392 / 2e-118 AT3G48200 1075 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032047 pacid=23161142 polypeptide=Lus10032047 locus=Lus10032047.g ID=Lus10032047.BGIv1.0 annot-version=v1.0 ATGCGTCTTTTCAAGCTTCTTGTACTTCTTACAGCAGTGATTGTGGCAGGGATTTTGGAACTAGTTCAATCTGCAGTAGTAATTCATTTCAATGAGACGC CACCTAAGTTTTCTAGGTTCTCAACTGCTGTTTTCAAGTACTCAGTTGAAGGGTCGGATGGTAAGAATGCATGCGTCAATAATGGTTGCCTTATTGCTTG TGAGCTTGATGGCCGCACTTTGAGATCATGTTCGGCAGATTCTTCATTGTTGAGGAACTTGACTGTGAATCAGGAGCATACTTTCATGCTGAATGTTACC GCTCAGAATGGCGACATAAACTCTTCATCTTATTCATGGTTCATCGATACAGTTCCACCCACAGCGACATTATCTACCGAAGATAACTACACAAATGTTG CAAAGGTAACCATTGATGTTACCTTCAGTGAGGCCTGCCCTGGGTTGGTAGATGGTCCAGGTTTCATTCATGCTTCTTCGCTTCGTGCCATTTTCCCGAA CCGGAAGTATGAAGTTGACGTAGGCCTCTCCTTGGAACATATGTATGGCCGCGTTGCTATCCGAATGGTCAATGGTTTTTGTACAGATGAAGCTGGAAAC TCTTTTACAAGGAGCAACACCTCTGTGATAATGGTTCACTTTGATAGGAGACCAGTGCTAGTAGATATGTGGATGCCTGTTTCATCCAATGTGCTGGTGA TCAATGGAATGACAAGAACTGTTCTTGCAACAAACAAAACAGAGGACCTGAAAGTTTTCCTGGATTTTAGTATCCCCATAAAAAATTCAACAGAAGAAGT CCTAAGTGCAATATATGTGAAGTCAGCTTCTATATCACCTGCTCTTGGTGGACATCAGGGGAATCGCAAGTTTGCTTTTCAACTCACCAATGTATCTCGT ACTGAAATCATCACAGTTGAGCTTACAACCAGTTTGATAATTGGCAAGACTGGCATTCCGACTTCACCTGTATCCCCACTTACAATTCTCTATGATTCAG TGAAGCCTGCGGTAGAGCTTAGCTCTGACTCACAAAGTGTGACTAAAGCATCTGGCATAAATTTGGCGGCGGAGTTCACAAAACCAGTTCTTGGCTTTGA TTCGTCAATGATACAAGTAGACGGAGGGAAAATTACTAGGCAGTACATTGAATCTCAGCAAGCAAGGATTGAACAACCTGCTCAAAATGATTTATCTTTT TCTTTCTTCAGGTTTGAGGAACACTCAAGAGAACTATACACGTTTACAGTCATATCTGAAACTCAGAGAACACTCTTTGTCTCTGTTCCTGCTGAGAAAG TAAGTGACATTTCCGGAAATCAAAATTTGGCATCCAACGGAATTCAACTGCATCATTACTCAACCCCTGCAACATTAACGTCACTGGATTCCTTCACCGG GGCTGGAGTGCTAGCAACCTCACTTGCAGCTGCTGGTCTTTCATTATCTTTAGCGAATATTGGAGTGATAGCTGCTTCCTCCTCGGGAAATGCAAATTAT GTTGCATCAGATCCACCAACTAATCTGCATGGAATGTTGGGACATCTACAAGTCTTCGTGATGTCAGATTGGCTCTTGGCCAATCATCCGATTCAATATT CAGAGACAATAAAAGGCCTTACGTGGCTTATACCTCGCGGAAAGCTACCATGGAGAAAGGATCAGACTTCGTTGTGGTCCAACCATGTTAGTATGGCTGA AGGAATAGAAGGTCCAGTGGCATTAAACTTTCCTCATTCTTATGGCGCTCACAATAATCACTCGGAAAATTTCACCAGCCATGCCTTTGACGTCTTTCGT GGACAAGATATAAGCACGAGAAGGCCTCAGTTTGGGCAACCTCTCAATCCAGCCGAATATTTCATTTATTTCTTGAGAGGAGAGCCCATGGCTGCCAGCA GTGCTGTCAAGAAACTGGGTAATAGTAAGGGGTGGGACAACATGGCTATGAATCTGTTTTGGCTTGGTGTAGTTACAGGCAGTTTGCTTGTACTCCACGT ATTGATAATGCTTCTCCTCAGATGGAGGACAGGAACGTCAGCTTTATGGATTATTTCGTTTTCAAGGTTCGGGACCCTTCTTCTAATTCTCATGTTACCT TGTATTTCTCAGTCTGCAGCATTTCTCATAAAAGGCGGGGCAGTTGGAGGCATAGTGGTTGGAGCTCTACTGCTGGTCATTCCAGCAGCATTTGTTTTAT CTGTTCTACTATTCCTCCTACTCGCAATTCTTCCCGGAAACTTAGTGCAGTACGAGGAAATCAAGTATGTAGCAGTAAGGGAGGCATGGTATCAAAAGCT ATGGTACTTCATTATCGACAGGCCAGTAAAGGGGAAATGGTTCTACAGAGATGGTGGTTTGACTTTGTCTTTTCTACAGAACTTCGGAATCCTTTTCGAG AATCAAAAGGGTCCTGCTTTGTTCTTCTTTGTCGATCAAAATGATCAAAGCACTTTTCCAAAGTGGAGTGAAAGCGGGAGAAGTGGGATTGGAAGAATGC GGGCCATCAGCTCGAACGACAGCAATGAAGAAGTCAAAGTTCCTGCATCTAGGAAGTGTTTCGGGTATGCAAGATCTTTGTACATCGTTCTTGATCTCAT AAGAAGAGCCAGCTTGGGAGTAATATCAGGAGCTTCTTCTTCAAAGCATTATAAAACAGCAAACATTCTGGCCTTGACAATAACAATGACACAGTTTATC TATCTCACGGCTCTCAAGCCTTACATCAGAAGGAGAATCCACGCAGTAGAAAGCATTTCCCTGCTGTGTGAATCGGGCATCTTCTTCATATCCATGGCCA ATTCTTCGACAGGAGCTGGAGCCACAATCCTAGGAGATGTGATGCTGGGTCTCCTTTTGCTTTCCACCATTGCTCAAATCACAAACGAATGGTATAGTAT GATCTCTTGCCTTTCGAGACTGTCGTGGAGGCAGCAGACATCTTTCGGGCAGACGCTTGGGTTTGCAACCCGAGGTCTCTTTGTACCTTTCTTTCCGAAG AAGAAATGGTCGAAAATCCTCTTGCCGAGTTCCTCCCAACCGAAAACAACAGGCTTTTCCAGCGTCCTTCCTTTGAGTCCGAACACTGATCACGGACTGA GGGACGAGAATGTATCGAGGCTTGATTCGTTCAGAGCCGCGTCTGCTACGGTGGTCCCGGTGGTTGGAGAGAATGCAAGTAGTGGTGATGCAGGAGGAGC AGGGAAGAGAGGGAAAGGAGCGATGATGGTGGTGGAGCAGAGGAGTGAGTTAAGGAAGTTGAGAGAGTTGGCAAGAGCTAGCTTCTACGGGGAAGGTAAG CGGAGAAATCATTCTAAGGATCATCGAGCTCAGCATTTTCGTGGTGCGAACTTGTATGACAAAAGTGAAGGTGAAGCATCATCTTCCTCCAAGACGTAG
AA sequence Show only first row Show all	>Lus10032047 pacid=23161142 polypeptide=Lus10032047 locus=Lus10032047.g ID=Lus10032047.BGIv1.0 annot-version=v1.0 MRLFKLLVLLTAVIVAGILELVQSAVVIHFNETPPKFSRFSTAVFKYSVEGSDGKNACVNNGCLIACELDGRTLRSCSADSSLLRNLTVNQEHTFMLNVT AQNGDINSSSYSWFIDTVPPTATLSTEDNYTNVAKVTIDVTFSEACPGLVDGPGFIHASSLRAIFPNRKYEVDVGLSLEHMYGRVAIRMVNGFCTDEAGN SFTRSNTSVIMVHFDRRPVLVDMWMPVSSNVLVINGMTRTVLATNKTEDLKVFLDFSIPIKNSTEEVLSAIYVKSASISPALGGHQGNRKFAFQLTNVSR TEIITVELTTSLIIGKTGIPTSPVSPLTILYDSVKPAVELSSDSQSVTKASGINLAAEFTKPVLGFDSSMIQVDGGKITRQYIESQQARIEQPAQNDLSF SFFRFEEHSRELYTFTVISETQRTLFVSVPAEKVSDISGNQNLASNGIQLHHYSTPATLTSLDSFTGAGVLATSLAAAGLSLSLANIGVIAASSSGNANY VASDPPTNLHGMLGHLQVFVMSDWLLANHPIQYSETIKGLTWLIPRGKLPWRKDQTSLWSNHVSMAEGIEGPVALNFPHSYGAHNNHSENFTSHAFDVFR GQDISTRRPQFGQPLNPAEYFIYFLRGEPMAASSAVKKLGNSKGWDNMAMNLFWLGVVTGSLLVLHVLIMLLLRWRTGTSALWIISFSRFGTLLLILMLP CISQSAAFLIKGGAVGGIVVGALLLVIPAAFVLSVLLFLLLAILPGNLVQYEEIKYVAVREAWYQKLWYFIIDRPVKGKWFYRDGGLTLSFLQNFGILFE NQKGPALFFFVDQNDQSTFPKWSESGRSGIGRMRAISSNDSNEEVKVPASRKCFGYARSLYIVLDLIRRASLGVISGASSSKHYKTANILALTITMTQFI YLTALKPYIRRRIHAVESISLLCESGIFFISMANSSTGAGATILGDVMLGLLLLSTIAQITNEWYSMISCLSRLSWRQQTSFGQTLGFATRGLFVPFFPK KKWSKILLPSSSQPKTTGFSSVLPLSPNTDHGLRDENVSRLDSFRAASATVVPVVGENASSGDAGGAGKRGKGAMMVVEQRSELRKLRELARASFYGEGK RRNHSKDHRAQHFRGANLYDKSEGEASSSSKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48200			unknown protein		Lus10032047 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	9.9	0.8381
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10009336 [exp]	10.5	0.8347
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10030105 [exp]	11.0	0.8369
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10020059 [exp]	19.9	0.8304
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	20.0	0.8331
AT3G25670			Leucine-rich repeat (LRR) fami...		Lus10027239 [exp]	22.9	0.8271
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	25.8	0.8222
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	26.7	0.8217
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10003624 [exp]	28.6	0.7588
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	30.9	0.8172

Compare expression of checked genes

Lus10032047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.