Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01910 587 / 0 AT-SO, ATSO, SOX sulfite oxidase (.1.2.3) AT1G37130 172 / 2e-47 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 164 / 2e-44 GNR1, NIA1 nitrate reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035213 [exp] 692 / 0 AT3G01910 615 / 0.0 sulfite oxidase (.1.2.3) Lus10012532 [exp] 598 / 0 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10041560 [exp] 506 / 0 AT3G01910 546 / 0.0 sulfite oxidase (.1.2.3) Lus10035402 [exp] 164 / 2e-44 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10038977 [exp] 163 / 4e-44 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 160 / 4e-43 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1) Lus10041561 [exp] 142 / 3e-42 AT3G01910 119 / 3e-35 sulfite oxidase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330900 [exp] 620 / 0 AT3G01910 686 / 0.0 sulfite oxidase (.1.2.3) Potri.005G172400 [exp] 168 / 5e-46 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 161 / 2e-43 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00174 [flax] [poplar] Oxidored_molyb Oxidoreductase molybdopterin binding domain CL0159 [flax] [poplar] E-set PF03404 [flax] [poplar] Mo-co_dimer Mo-co oxidoreductase dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10032048 pacid=23161071 polypeptide=Lus10032048 locus=Lus10032048.g ID=Lus10032048.BGIv1.0 annot-version=v1.0 ATGCCAGGAATAAAGGGGCCGTCGGATTATTCCCAGGAACCACCTCGCCATCCTTGTCTTTTCATCAACTCCAAGCAACCTTTCAATGCTGAACCACCTC GTTCAGCCTTGGTCAACAATTACATCACACCAGTGGACTTCTTCTACAAGAGAAACCATGGCCCCATCCCGCTGGTTGATGATGTTCAAAGGACGCTTCC AAAGTACAATGTCACAGCCACCTTGCAGTGTGCTGGTAACAGGAGGACTGCCATGAGCAAAGTCCAGACAGTTAAAGGAGTTGGATGGGATATATCCGCT ATTGGAAATGCGGTCTGGGGAGGTGCCAAATTGGCTGACGTTCTTGAACTTGTTGGGATACCTAACTTCACTTTCGTTACGAAATCTGGTGGGAAGCATG TTGAATTTGTCAGCATTGATAAGTGCAAGGAGGAGAACGGGGGACCTTACAAGGCATCGATTCCGCTCATTCAAGCCACAAACCCTGAAGCTGATGTTTT ACTTGCTTATGAGATGAATGGAGAGCCTTTAAACAGGGACCACGGATATCCATTACGGGTAGTTGTCCCAGGTGTTATCGGTGCACGTTCGGTCAAATGG TTAGATACAATCAACATACTAGCCGGAGAATCTCAGGGATTCTTCATGCAAAAAGATTATAAGATGTTCCCACCTTCAGTGAATTGGGATAACATCAATT GGTCAACAAGGAGGCCGCAAATGGATTTCCCTGTCCAATGTGCCATTTGTTCCTTGGAAGATCTGACTATTTTAAAGCAGCCTGGGAAGGTTGCCGTCAG TGGGTATGCAGTATCAGGAGGCGGTCGAGGAATCGAGAGGGTAGATCTGTCGATCGATGGTGGTAAGACCTGGGTGGAAGCTAAGAGGTATCAGCAGAAG CCTGGAACTCCTTATACATCAGATGAGCTGAACAGTGACAAATGGGGATGGGTTCTTTTTGAAGCCATAGTGGATCTCCCTCGTAGCACAGAGATTGTGG CAAAAGCAGTGGATTCAGCAGCTAATGTGCAACCTGAAAGTGTGCAAGAAATCTGGAACCTGAGGGGGGTCCTGAACACATCGTGGCACCGGGTCCAAGT CCGGGTTGGTCGCTCCAGTCTGTAA
AA sequence Show only first row Show all	>Lus10032048 pacid=23161071 polypeptide=Lus10032048 locus=Lus10032048.g ID=Lus10032048.BGIv1.0 annot-version=v1.0 MPGIKGPSDYSQEPPRHPCLFINSKQPFNAEPPRSALVNNYITPVDFFYKRNHGPIPLVDDVQRTLPKYNVTATLQCAGNRRTAMSKVQTVKGVGWDISA IGNAVWGGAKLADVLELVGIPNFTFVTKSGGKHVEFVSIDKCKEENGGPYKASIPLIQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKW LDTINILAGESQGFFMQKDYKMFPPSVNWDNINWSTRRPQMDFPVQCAICSLEDLTILKQPGKVAVSGYAVSGGGRGIERVDLSIDGGKTWVEAKRYQQK PGTPYTSDELNSDKWGWVLFEAIVDLPRSTEIVAKAVDSAANVQPESVQEIWNLRGVLNTSWHRVQVRVGRSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10032048 [exp]	0	1
					Lus10028295 [exp]	4.0	0.8942
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	6.2	0.9190
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10038344 [exp]	9.6	0.8896
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	9.9	0.8912
AT1G50660			unknown protein		Lus10002072 [exp]	14.1	0.8735
AT5G07470		PMSR3, ATMSRA3	ARABIDOPSIS THALIANA METHIONIN...		Lus10013673 [exp]	15.2	0.8213
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	15.6	0.8705
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	16.3	0.8882
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	17.7	0.8823
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	18.0	0.8839

Compare expression of checked genes

Lus10032048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.