Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14170 728 / 0 CHC1 SWIB/MDM2 domain superfamily protein (.1) AT3G01890 585 / 0 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 50 / 3e-07 SWIB/MDM2 domain superfamily protein (.1) AT3G19080 47 / 3e-05 SWIB complex BAF60b domain-containing protein (.1) AT4G34290 43 / 9e-05 SWIB/MDM2 domain superfamily protein (.1) AT1G49520 44 / 0.0001 SWIB complex BAF60b domain-containing protein (.1) AT2G35605 41 / 0.0002 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 40 / 0.0008 SWIB/MDM2 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035214 [exp] 657 / 0 AT5G14170 553 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10016761 [exp] 508 / 2e-176 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10022456 [exp] 505 / 4e-175 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 51 / 2e-07 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 45 / 3e-06 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 49 / 1e-05 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 48 / 2e-05 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10035215 [exp] 0 / 1 AT5G14170 56 / 1e-14 SWIB/MDM2 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331400 [exp] 778 / 0 AT5G14170 752 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.017G069300 [exp] 770 / 0 AT5G14170 768 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.012G096700 [exp] 626 / 0 AT5G14170 564 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.015G094500 [exp] 590 / 0 AT5G14170 580 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.005G134500 [exp] 60 / 1e-09 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.004G145200 [exp] 50 / 3e-06 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 49 / 7e-06 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.001G297400 [exp] 46 / 1e-05 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 41 / 0.0003 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.013G070600 [exp] 40 / 0.0008 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10032049 pacid=23161227 polypeptide=Lus10032049 locus=Lus10032049.g ID=Lus10032049.BGIv1.0 annot-version=v1.0 ATGTCTGGTGGGAATACTAACAACACTCCGCCAAAGAGCCTAGGGCAGTCTTCATCTCCATTTGGGAATGTTGGGATTGTTAATTCTTCGGTGCCTCCTC TGAATCAAGGGTTCCCACAGTCGCAACAAGGGTTTCAGAATCAGTTTCAGCAGATGTCTCAAGCTCAAGCTAATGTCCATGCTCAGCTGAAAGCACAGGC GGCTCATGCTGCTCAGGTTCAAGCACACGCGCAGTTCCAAGCGCATTTGCAGGCGCAAGGGATCTCTCTTGCTCCAAATCAGAATGCTGGTGGTATTGGG GGAGGCTTAGGTACTTCTTCGCCTTCGTTTGGAACCCCCGGTATGCCTAGTGCGAAGAGGATTGGTCAGAAGCCGCTAGGAAGACCTCCCGGTATTCCCA TGACGAACATGAACATGATCTCGCCGCCTAAGCAGATGGATTTGACGCCTGCTAATCGTAAGAAGAAGCAGAAGGTTCCGGAGAAGCAGCTGCACGAGAG AGTGGCGGCTATTCTACCTGAATCAGGACTTTATACTCAGCTTCTCGAGTTTGAGGCTCGTGTCGATGCTGCTCTAGCTAGGAAGAAAGTTGACATTCAG GAAGCCCTTAAAAGCCCTCCATCTGTTCAGAAAACCCTTAGGATTTATGTCTTCAACACGTTCGCCAATCAGATCAAGACGATTCCCATGAAGCCGAATG CCGAACCTCCCACCTGGACTCTCAAAATTGTTGGGAGGATTCTGGAAGACGGGGTGGACCCTGACCAGCCTGGATTCGCTCATAAACCAAATACGATCTA TCCAAAGTTTTCGTCTTTCTTCAAGAGAGTGACCATTTCGTTAGATCAGAGACTGTATCCTGATAATAACATGATCGTGTGGGAGCAAGCTCGTTCTCCT GCACCGCAAGAAGGTTTTGAAGTGAAGAGAAAGGGGGATACAGAGTTCACATTGCATGTTAGGTTGGATATGAATTATGTCCCTGAGAAATTTAAGTTAT CTCCAGCTTTGACAGAAGTTCTTGGGATCGAGGTAGAAAGCCGTCCGAGAATAATAGCTGCAATCTGGCATTATGTAAAAGCTAGGAAACTGCATAGCCC CGAGGACCCTGCGTTCTTCAATTGCGATCCACCTTTGCAGAAAGTGTTCGGGGAGGCGAAAGTGAAGTTCACCATGGTTTCCCAGAAGATATCGCAGCAT CTATTTCCTCCTCAACCGATACATTTGGAACATCAGATCAAGCTTTCAGGGAACAATCCTGTTGGGACAGCCTGCTATGATGTGTTGGTAGATGTGCCGT TTCCAATTCAGAGGGAATTGACAGCACTGTTGGCAAATGCAGAGAAGAATAAGGAGATCGATGCCTGTGACGAATCAATATGTACTGCCATTAGGAAAAT TCATGAACATCGTAGAAGGCGAGCATTCTTCCTAGGTTTTAGTCAGTCCCCTGTGGAGTTCATTAACGCTCTAATTGAATCGCAAAGCAAAGACTTGAAG CTTGTGGCTGGAGAAGCCAGTCGAAGTGTCGAGAAGGAGCGCCAAGCAGAATTCTTCAACCAACCATGGGTTGAAGATGCAGTGATCCGATACTTGAACC GGAAGCCTGCTGCAGGAAATGAAGCTCCTGGAAGCTCATAG
AA sequence Show only first row Show all	>Lus10032049 pacid=23161227 polypeptide=Lus10032049 locus=Lus10032049.g ID=Lus10032049.BGIv1.0 annot-version=v1.0 MSGGNTNNTPPKSLGQSSSPFGNVGIVNSSVPPLNQGFPQSQQGFQNQFQQMSQAQANVHAQLKAQAAHAAQVQAHAQFQAHLQAQGISLAPNQNAGGIG GGLGTSSPSFGTPGMPSAKRIGQKPLGRPPGIPMTNMNMISPPKQMDLTPANRKKKQKVPEKQLHERVAAILPESGLYTQLLEFEARVDAALARKKVDIQ EALKSPPSVQKTLRIYVFNTFANQIKTIPMKPNAEPPTWTLKIVGRILEDGVDPDQPGFAHKPNTIYPKFSSFFKRVTISLDQRLYPDNNMIVWEQARSP APQEGFEVKRKGDTEFTLHVRLDMNYVPEKFKLSPALTEVLGIEVESRPRIIAAIWHYVKARKLHSPEDPAFFNCDPPLQKVFGEAKVKFTMVSQKISQH LFPPQPIHLEHQIKLSGNNPVGTACYDVLVDVPFPIQRELTALLANAEKNKEIDACDESICTAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLK LVAGEASRSVEKERQAEFFNQPWVEDAVIRYLNRKPAAGNEAPGSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10032049 [exp]	0	1
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	1.4	0.8996
AT4G22350			Ubiquitin C-terminal hydrolase...		Lus10010490 [exp]	2.0	0.8894
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	2.2	0.8878
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	3.7	0.8855
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	4.5	0.9010
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	6.2	0.8548
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10014546 [exp]	6.6	0.8701
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	7.1	0.8901
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10034133 [exp]	15.2	0.8744
AT4G24500			hydroxyproline-rich glycoprote...		Lus10020639 [exp]	17.0	0.8044

Compare expression of checked genes

Lus10032049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.