Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40900 107 / 3e-28 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 95 / 1e-22 unknown protein AT1G14590 88 / 2e-20 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 86 / 7e-20 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 78 / 5e-17 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28695 67 / 4e-13 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 65 / 2e-12 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT4G15970 65 / 2e-12 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 63 / 7e-12 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 42 / 0.0002 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031927 [exp] 100 / 1e-25 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 98 / 2e-24 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 97 / 9e-24 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 97 / 9e-24 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 95 / 6e-23 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 85 / 2e-19 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 84 / 5e-19 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 84 / 7e-19 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 82 / 2e-18 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142200 [exp] 99 / 2e-24 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 97 / 1e-23 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 94 / 1e-22 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G037300 [exp] 89 / 7e-21 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G110600 [exp] 88 / 1e-20 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.012G112600 [exp] 84 / 2e-19 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 68 / 2e-13 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 67 / 4e-13 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 41 / 0.0004 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10032050 pacid=23161311 polypeptide=Lus10032050 locus=Lus10032050.g ID=Lus10032050.BGIv1.0 annot-version=v1.0 ATGGAAACTAGAACGGTGATCGTAACGGTGATTGAAGATAATTCGAGGGCTGGTTCTGATATTATTCATGGATCTCCGTCGACGGTGGAGAATTTCCTGG ATATGTTGAGAGATGGAGAGACAACCAAACACCTTGTGAATCACTTGGTAGTTTTGACGTTGGATCCTCGAAGTTTTCGTCATTGCAAATCGGTCCATCC CCACTGCTTCTTCTTGGAGTACCGTGGTAGAAGGGAACTGTACAAAGCCACCTTAAAGAGGAGGAATGAGTTTCTAGTCCAAGTGCTTGAATTGGGTTAC AACTTGTTTTTTACGGATGTGGGTTTACTATGGTGGAAGAACCCACTCCCGATGTTTGGTGGTGAAGACCACATATCGATAGGATGCGAGTTTTGGAAAC AAAGAAGAGAGTACTTCTACCTAAAGTCTGGTGCCAGATCCATTCACTTGTTCAAGCTGTGGAAGCTGTTTAGCTTTATCCACCCTCAAACCCAGAACTC CTCTTTATGTGAACTCAGATACAACGAAGAACTCGGTTCGGTTATCAACAAAACCACCATCTTCATCCCTAGCCAGACAGCCAGTTCAATGTAG
AA sequence Show only first row Show all	>Lus10032050 pacid=23161311 polypeptide=Lus10032050 locus=Lus10032050.g ID=Lus10032050.BGIv1.0 annot-version=v1.0 METRTVIVTVIEDNSRAGSDIIHGSPSTVENFLDMLRDGETTKHLVNHLVVLTLDPRSFRHCKSVHPHCFFLEYRGRRELYKATLKRRNEFLVQVLELGY NLFFTDVGLLWWKNPLPMFGGEDHISIGCEFWKQRREYFYLKSGARSIHLFKLWKLFSFIHPQTQNSSLCELRYNEELGSVINKTTIFIPSQTASSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40900			Nucleotide-diphospho-sugar tra...		Lus10032050 [exp]	0	1
AT2G37370			unknown protein		Lus10009063 [exp]	1.0	0.9682
AT2G37370			unknown protein		Lus10025285 [exp]	4.5	0.8970
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	5.8	0.9265
					Lus10030256 [exp]	6.6	0.8454
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	7.7	0.9145
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	8.9	0.8793
					Lus10003753 [exp]	9.5	0.8793
					Lus10027520 [exp]	9.6	0.8066
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	10.0	0.8793
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	10.5	0.8793

Compare expression of checked genes

Lus10032050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.