Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40870 674 / 0 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27190 658 / 0 UKL2 uridine kinase-like 2 (.1) AT4G26510 593 / 0 UKL4 uridine kinase-like 4 (.1.2) AT1G55810 593 / 0 UKL3 uridine kinase-like 3 (.1.2.3) AT3G27440 548 / 0 UKL5 uridine kinase-like 5 (.1) AT3G53900 79 / 2e-16 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT3G27210 78 / 4e-16 unknown protein AT3G01860 72 / 1e-14 unknown protein AT1G32060 75 / 4e-14 PRK phosphoribulokinase (.1) AT1G73980 72 / 5e-13 Phosphoribulokinase / Uridine kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035216 [exp] 717 / 0 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10041569 [exp] 698 / 0 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10016989 [exp] 525 / 0 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10021310 [exp] 525 / 0 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10022289 [exp] 520 / 0 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10035217 [exp] 332 / 1e-111 AT3G27210 79 / 3e-18 unknown protein Lus10041572 [exp] 145 / 1e-39 AT3G01860 77 / 1e-16 unknown protein Lus10024350 [exp] 79 / 2e-15 AT3G53900 374 / 9e-128 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Lus10000674 [exp] 74 / 8e-14 AT1G32060 667 / 0.0 phosphoribulokinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069600 [exp] 689 / 0 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 683 / 0 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G467800 [exp] 594 / 0 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 594 / 0 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.017G071200 [exp] 550 / 0 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.001G332500 [exp] 120 / 8e-31 AT3G01860 96 / 3e-24 unknown protein Potri.006G091000 [exp] 83 / 3e-17 AT3G53900 379 / 7e-133 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Potri.010G058700 [exp] 75 / 6e-15 AT3G01860 83 / 4e-19 unknown protein Potri.001G134000 [exp] 76 / 2e-14 AT1G32060 699 / 0.0 phosphoribulokinase (.1) Potri.003G099400 [exp] 72 / 2e-13 AT1G32060 690 / 0.0 phosphoribulokinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10032051 pacid=23161111 polypeptide=Lus10032051 locus=Lus10032051.g ID=Lus10032051.BGIv1.0 annot-version=v1.0 ATGGGTTCATGTGTATCGACGGTTGACAAGGGGACGGCGCAGCCGGCAAAAAAAACCGGAGTGACGGCGACGACGACGACAACGACGGCGTTTGGTTCCA AATCGAACAAGCAGGTTCTGCCTGAGTCCCCAGTCATGAATGGCGATAAGCTCTTCCTTAGCTACGGCAGCAAAGAGGAATCTTTTTTTGATTCCCAGCC CTGGCTTGAATCCGATGCTGAAGACGATTTCCATAGTGTCAGGGGAGATTTTACCCCGTCTCGAGGGAGCACGCCGGTCCATCACAACTTCTCCATCGCA ACACCTCAACACAACAAACTTATCGCCGTGGAGGTAAATTCTACGATAAATTCAATGACAGTCTTTTCTCCGATGAAACGGAAGAAGAGACTGTCTGAGC TTTTCCAAGACGATTCGAGGGATAATCTCAACTTATTATACGACGACCAAGCTGATGACTTACCTTGTTCGGACGACCGAACCCAAACCAAGATTGCCAA TGATCAGAAGAATGTGGAGGGTACTGAAAGGTTTGACAAAGCTCAGAACAAGGAAGCTAAATCGCCTAAACCGGTTCAATATTTTTGTCTCCACCTGTCC TGTTCTCGCCTTCTCGGTTCTCCGTCCTCCGGTCTTCTCCCGCCGCCGTTTCTGTTTTCGACAGAGCTTTTGCCTACGTTGCCAGACAGGATGCCGGAGG AAACCGACTACATCGACTATTCCATGGAGAAGGCATTTGATGCATTTGACACTGACCAGCTTTTGGACTGCGTTGAAACGCTTAAGCGGGGGCTTCCTTA TCAAGTCCCTATATATGACTTCAAGACCCATCAGCGCTGTTCAGATAGCTTTAGGCAGGTGAATGCTTCTGATGTTATTATATTAGAGGGTATATTGGTT TTCCATGATCAACGTGTTCGCAACCTTATGAATATGAAGATCTTTGTTGATACAGATCCCGATGTGAGGCTTGCTCGCAGAATTCGGCGTGACACGGTTG AGAGGGGTAGAGATATAAACTCTGTTCTTGAGCAGTATGCTAAATTTGTGAAGCCGGCTTTTGATGATTTCGTACTTCCTTCAAAGAAGTATGCCGATGT GATCATACCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATAGTTCAGCATATCCAGACGAAGCTTGGTCTACATGACCTCTGCAAAATATATCCA AATGTGTATGTTATTCAAACAACTTTTCAGATTAGAGGCATGCATACGTTGATTCGAGACAGGGAAATTTCAAAGCATGATTTCGTTTTTTACTCGGATA GACTTATTCGGCTGGTTGTTGAACATGGCCTTGGTCATTTGCCATTCACGGAGAAGCAAGTTGTTACCCCTACCGGGTCAGTTTATACTGGGGTTGATTT CTGTAAAAAATTATGCGGAGTTTCTATCGTACGAAGTGGAGAAAGCATGGAAAACGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGTAAAATTTTA ATCCACAGGGATGGCGACAACGGAAAGCAGCTTATATACGAGAAGCTTCCAAACGACATTTCCGAAAGGCACGTCCTGCTTCTAGATCCTGTTCTTGCTA CTGGTAACTCGGCCAACCAAGCAATCGATCTACTCATACAGAAAGGAGTTCCAGAATCCCATATTATATTCTTAAACCTAATCTCTGCTCCCGAAGGCAT CCATTGCGTCTGCAAGAGGTTTCCATCTCTCAAAATCGTGACTTCCGAAATCGACATAGCAATAAACGAAGAATTCCGGGTCATACCTGGGCTGGGAGAG TTCGGTGATCGTTACTTTGGAACTGATGATTGA
AA sequence Show only first row Show all	>Lus10032051 pacid=23161111 polypeptide=Lus10032051 locus=Lus10032051.g ID=Lus10032051.BGIv1.0 annot-version=v1.0 MGSCVSTVDKGTAQPAKKTGVTATTTTTTAFGSKSNKQVLPESPVMNGDKLFLSYGSKEESFFDSQPWLESDAEDDFHSVRGDFTPSRGSTPVHHNFSIA TPQHNKLIAVEVNSTINSMTVFSPMKRKKRLSELFQDDSRDNLNLLYDDQADDLPCSDDRTQTKIANDQKNVEGTERFDKAQNKEAKSPKPVQYFCLHLS CSRLLGSPSSGLLPPPFLFSTELLPTLPDRMPEETDYIDYSMEKAFDAFDTDQLLDCVETLKRGLPYQVPIYDFKTHQRCSDSFRQVNASDVIILEGILV FHDQRVRNLMNMKIFVDTDPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIQTKLGLHDLCKIYP NVYVIQTTFQIRGMHTLIRDREISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKIL IHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDIAINEEFRVIPGLGE FGDRYFGTDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	0	1
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042027 [exp]	1.4	0.7902
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	4.9	0.7585
AT3G11590			unknown protein		Lus10005200 [exp]	5.7	0.7394
AT3G27210			unknown protein		Lus10035217 [exp]	7.4	0.7903
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	7.7	0.7727
AT1G70780			unknown protein		Lus10031920 [exp]	10.7	0.7780
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10039413 [exp]	19.4	0.7339
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	20.8	0.7570
					Lus10021186 [exp]	22.4	0.7059
					Lus10028987 [exp]	23.0	0.6887

Compare expression of checked genes

Lus10032051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.