Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01850 350 / 3e-123 Aldolase-type TIM barrel family protein (.1.2) AT1G63290 347 / 8e-122 Aldolase-type TIM barrel family protein (.1) AT5G61410 140 / 5e-40 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035219 [exp] 441 / 3e-156 AT3G01850 372 / 6e-130 Aldolase-type TIM barrel family protein (.1.2) Lus10001653 [exp] 148 / 5e-43 AT5G61410 476 / 6e-172 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10021627 [exp] 145 / 9e-42 AT5G61410 452 / 2e-162 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10015715 [exp] 140 / 6e-40 AT5G61410 457 / 4e-164 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019083 [exp] 92 / 7e-22 AT5G61410 265 / 3e-89 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019082 [exp] 42 / 5e-05 AT5G61410 136 / 4e-41 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332700 [exp] 372 / 7e-132 AT3G01850 387 / 2e-138 Aldolase-type TIM barrel family protein (.1.2) Potri.015G062100 [exp] 142 / 6e-41 AT5G61410 494 / 4e-179 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00834 [flax] [poplar] Ribul_P_3_epim Ribulose-phosphate 3 epimerase family
Representative CDS sequence Show only first row Show all	>Lus10032052 pacid=23161139 polypeptide=Lus10032052 locus=Lus10032052.g ID=Lus10032052.BGIv1.0 annot-version=v1.0 ATGGCGCCGGCGGCGAAGATTGCTCCTTCGATGCTGTCCTCCGACTTCGCTAATCTTGCTACGGAAGCTCAGCGGATGCTGGAATGCGGCGCTGATTGGC TTCACATGGACATCATGGATGGCCACTTTGTCCCGAATCTAACCCTTGGTGCTCCGATCATCGAGAGCTTGAGGAAGCACACCAAGGCATACCTGGATTG CCATCTTATGGTGACAAACCCTCTTGATTATGTTGAACCTTTGGCTAAAGCTGGTGCCTCAGGATTTACATTTCATGTTGAGGCTGCAAGAGAAAACTGG GATGAAATAGTTCAAAAGATTAAAGCTAAGGGTATGAAGCCTGGTGTGTCACTTAAACCTGGAACGCCCATTGAAGAAGTTTATCCTTTGATTGAAGGCA AAAATGCGGTGGAATTAGTTCTTGTGATGACTGTTGAACCTGGTTTTGGGGGACAGAAGTTCATGCCGGAAATGATGGACAAAGTTCGGACGCTGAGACA AAAATATCCATCTTTGGATATAGAGGCAAGTCACTACGATCTCTTGTGTCTTTTACTTGCTTCTCTTGCTCCCCTCATACTATTCACATTCAAGGAACCA TCCAGAGATAGCAGCTTGAGGGGCCGTCCCTTCGACCTAGTTTTTAACGTATGGAATATGGTGATGCAGGTGGACGGTGGGTTAGGTCCATCAACAATAG GTGCAGCAGCAGCAGCTGGAGCAAACTGCATTGTAGCAGGTAGCTCAGTGTTCGGAGCTCCTGAACCAGCCGAAGTAATATCCCTTTTGAGAAATTCTGT TGAAGGAGCTCAGTAA
AA sequence Show only first row Show all	>Lus10032052 pacid=23161139 polypeptide=Lus10032052 locus=Lus10032052.g ID=Lus10032052.BGIv1.0 annot-version=v1.0 MAPAAKIAPSMLSSDFANLATEAQRMLECGADWLHMDIMDGHFVPNLTLGAPIIESLRKHTKAYLDCHLMVTNPLDYVEPLAKAGASGFTFHVEAARENW DEIVQKIKAKGMKPGVSLKPGTPIEEVYPLIEGKNAVELVLVMTVEPGFGGQKFMPEMMDKVRTLRQKYPSLDIEASHYDLLCLLLASLAPLILFTFKEP SRDSSLRGRPFDLVFNVWNMVMQVDGGLGPSTIGAAAAAGANCIVAGSSVFGAPEPAEVISLLRNSVEGAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	0	1
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	1.0	0.9253
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	2.0	0.9138
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	2.4	0.9093
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	3.6	0.8711
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	6.0	0.8950
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	6.5	0.8814
AT1G07940			GTP binding Elongation factor ...		Lus10023497 [exp]	7.1	0.8667
AT1G18980			RmlC-like cupins superfamily p...		Lus10036658 [exp]	7.4	0.8830
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	7.9	0.8774
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	8.7	0.8648

Compare expression of checked genes

Lus10032052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.