Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57000 161 / 8e-48 nucleolar essential protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035220 [exp] 503 / 0 AT3G57000 165 / 3e-49 nucleolar essential protein-related (.1) Lus10032054 [exp] 160 / 1e-47 AT3G57000 239 / 2e-78 nucleolar essential protein-related (.1) Lus10035222 [exp] 159 / 3e-47 AT3G57000 239 / 2e-78 nucleolar essential protein-related (.1) Lus10028959 [exp] 152 / 3e-44 AT3G57000 352 / 3e-122 nucleolar essential protein-related (.1) Lus10007483 [exp] 152 / 3e-44 AT3G57000 347 / 1e-120 nucleolar essential protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040600 [exp] 183 / 1e-56 AT3G57000 349 / 1e-121 nucleolar essential protein-related (.1) Potri.016G037500 [exp] 175 / 2e-53 AT3G57000 338 / 4e-117 nucleolar essential protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF03587 [flax] [poplar] EMG1 EMG1/NEP1 methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10032053 pacid=23161186 polypeptide=Lus10032053 locus=Lus10032053.g ID=Lus10032053.BGIv1.0 annot-version=v1.0 ATGGCGAAGAGGAAGAGAGGGATGGCTATGCCGTCGGAAGAAAGACAGTCGAAGAAGGGAGCAGTAGGAAGGGGCAAGATAGAGCCGGAAGCTGTTGATT TGATTGCTTCAAAGCAAAGAGAGGAAGCCATTGCCAAGTGCAGCGAGAGTAATCTCCATTTACGGGATATCAAGTCCCGTGCTGTGTTTATTCTTGAGAA TGCTTCTCTCACAAAGGGCTTTGTCCACAAGAAAAGGAAGATATTGCGGTGTAACGAGGATAGCAGTTCTCTGTTGAAACAAGGAAAGAACCCCAATGAT TATCAGCCTGACATTGTCTTTGAGGCTCTCCGGGCGATTCTGGATAGTAAACTTAATAAGGCTGGTATGGTTGGAGCGATTTACGTCAAAACTGATGCTG GGATACTCATTGAAGTCAAACCTCATTTTTTTCATTATGAGTTGAACTTGTTTTCATTGAGCTCGTTCTCTTCGCCATTGTTTTTGGCTTTGGCACTTTA TGAAGTGGATGTACTGGAGAAGTCTTCTATACGGTCAAAGGATACTGGGGATGTACTCATTCGTACGGTTGAAGGTCCTGTAACGCGATATCTACCAGAG AATGCACGTATAACCGGCCTCTCTTACAGCTCGCAGAAGTCTGTTCATGTAAAGGACTATGTTTCTGCTATTGTTGACGATTTAAACCCAGTGTTTGTGG TGGGTGCAATGGTGAAGGGTAAGGTCAGCGCGGAATACACTAATGACTACGTTTCAATATCAGACTACCCGTTGAGTGCGAAGTATTGTCTCGGGATGAT ATGCCATGCACTGGAGCAGAAGTGGAGCATCTTCTGA
AA sequence Show only first row Show all	>Lus10032053 pacid=23161186 polypeptide=Lus10032053 locus=Lus10032053.g ID=Lus10032053.BGIv1.0 annot-version=v1.0 MAKRKRGMAMPSEERQSKKGAVGRGKIEPEAVDLIASKQREEAIAKCSESNLHLRDIKSRAVFILENASLTKGFVHKKRKILRCNEDSSSLLKQGKNPND YQPDIVFEALRAILDSKLNKAGMVGAIYVKTDAGILIEVKPHFFHYELNLFSLSSFSSPLFLALALYEVDVLEKSSIRSKDTGDVLIRTVEGPVTRYLPE NARITGLSYSSQKSVHVKDYVSAIVDDLNPVFVVGAMVKGKVSAEYTNDYVSISDYPLSAKYCLGMICHALEQKWSIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	0	1
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	1.0	0.9212
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	1.4	0.9207
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	2.0	0.9149
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	2.2	0.9066
AT1G73350			unknown protein		Lus10042294 [exp]	2.4	0.9199
AT5G40660			ATP12 protein-related (.1)		Lus10000142 [exp]	3.0	0.8673
AT1G13570			F-box/RNI-like superfamily pro...		Lus10029077 [exp]	3.9	0.8563
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	4.0	0.8729
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	4.2	0.8946
AT3G56160			Sodium Bile acid symporter fam...		Lus10043443 [exp]	4.7	0.8652

Compare expression of checked genes

Lus10032053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.