Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57000 221 / 1e-71 nucleolar essential protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035222 [exp] 464 / 9e-168 AT3G57000 239 / 2e-78 nucleolar essential protein-related (.1) Lus10028959 [exp] 220 / 7e-71 AT3G57000 352 / 3e-122 nucleolar essential protein-related (.1) Lus10007483 [exp] 218 / 2e-70 AT3G57000 347 / 1e-120 nucleolar essential protein-related (.1) Lus10035220 [exp] 150 / 7e-44 AT3G57000 165 / 3e-49 nucleolar essential protein-related (.1) Lus10032053 [exp] 145 / 5e-42 AT3G57000 163 / 1e-48 nucleolar essential protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040600 [exp] 242 / 1e-79 AT3G57000 349 / 1e-121 nucleolar essential protein-related (.1) Potri.016G037500 [exp] 239 / 1e-78 AT3G57000 338 / 4e-117 nucleolar essential protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF03587 [flax] [poplar] EMG1 EMG1/NEP1 methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10032054 pacid=23161093 polypeptide=Lus10032054 locus=Lus10032054.g ID=Lus10032054.BGIv1.0 annot-version=v1.0 ATGGGGATGAAACGAAAGAAGGGAGAACGAAACGAGGAGGGAGAAGAGAAGATAAAAGTTCCATGCTTGAAGCAAGCAAGTGATGAGCCAAACCCATCTG AAGGCGAGGTGGCAATAGATCTCCCTGGGATTGAATTAGCACCATCCCTTCCGAATTCCAAAGCTGGGGTGATTTTTGTTCTTGAGAAGGCTTCCTTGGT CCTTGCTAATGTTGGACGAAAATATCGGATTCTAAACGCAAATGAGCATTCTGACTATTTGCGGAAGAAGAACATGGATCCATACAAGTACAGACCTGAT ATCGTTCATGAGGCTCTTGTTGGAATTATGGATAGCCGACTCCGTATGGCTGGTAAGTTAAAGGCAGTGTACATCAGGACAGATGAAGGGGTTTTGATTA AAGTTGAGCCTAATGCTCGAGTTCCTAGAACGTTAGAAGAATTCTGTGATATGATGGCTCAGCTGTTACAGAAATTGAGCATCAAAGCCAAAGGGAAGGG TGGGAAATTGTTGCGGTTGGTTCAGAATCCCGTAACTCAGTACTTTCCTGTAAACTCCACTAAAATAGGTCTCTCATTTGTTTCGCCTAAGGCACTCCCC ATAGAGCAGTACGTTACTGGAGCTGACACGAACACTGACCTTATTTTTGTGGTTGGCGCAATGGCCCATGGGAAAATCGATTGCGATTACCTTGATGATC TTGTAGCAGTTTCTAGCTATCCATTGACTGCTGCTGCATGTTTGAGAGACATATCCATTGCACTGGAGACCAAATGGAAAATTCACTGA
AA sequence Show only first row Show all	>Lus10032054 pacid=23161093 polypeptide=Lus10032054 locus=Lus10032054.g ID=Lus10032054.BGIv1.0 annot-version=v1.0 MGMKRKKGERNEEGEEKIKVPCLKQASDEPNPSEGEVAIDLPGIELAPSLPNSKAGVIFVLEKASLVLANVGRKYRILNANEHSDYLRKKNMDPYKYRPD IVHEALVGIMDSRLRMAGKLKAVYIRTDEGVLIKVEPNARVPRTLEEFCDMMAQLLQKLSIKAKGKGGKLLRLVQNPVTQYFPVNSTKIGLSFVSPKALP IEQYVTGADTNTDLIFVVGAMAHGKIDCDYLDDLVAVSSYPLTAAACLRDISIALETKWKIH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	0	1
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	1.7	0.8757
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	2.4	0.8911
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10030076 [exp]	3.2	0.8587
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	3.3	0.8573
AT1G30240			unknown protein		Lus10026071 [exp]	4.0	0.8991
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10028117 [exp]	9.2	0.8458
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	9.6	0.8727
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	10.8	0.8539
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	11.7	0.8443
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10014554 [exp]	11.8	0.8460

Compare expression of checked genes

Lus10032054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.