Plant FIBer expression Database

Lus10032056 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G53970 90 / 3e-21 proteasome inhibitor-related (.1.2)
AT1G48530 47 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035223
[exp]
236 / 2e-77 AT3G53970 276 / 4e-92 proteasome inhibitor-related (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G103800
[exp]
66 / 1e-12 AT3G53970 206 / 2e-65 proteasome inhibitor-related (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11566 PI31_Prot_N PI31 proteasome regulator N-terminal
Representative CDS sequence
>Lus10032056 pacid=23161122 polypeptide=Lus10032056 locus=Lus10032056.g ID=Lus10032056.BGIv1.0 annot-version=v1.0
ATGAATGATAAGTTGATGGTTAGTGCTTTGCCTGCTGACAAGGATTCCAAATCTGCTGCTGAGCCTCTTCATCTAGAAATTAGTGTTAACGACTATGCTG
GCGAGGATGGGGGTTCCAATTACTCGCTGCAGTTCAAGAACTTCGATAAGCTGATTACGAATCTCAACGTTGAGGTATTGTCTAAACTGGGAAGTTCTTC
CCAGTCCGGCTCGTCCAGTAGATCAACCAGGCTTGTTCTTCTAACTTTTTCTTCCCTCCTTTTGCTGGGGTGTGACACCCTCTGTAGCCATCTGAGTGAC
ATAGATAGGCATGTTCAGAGTGAACCTCGCAGTGGGCTGCCTGAACAGGAGAATCCTCAGTTTCATCCCCAGTTTGATCCCTCAGGAGTTATTGTTCCGC
CCATTCCTCCATTCCACTTTGATGATACAGTTCCTGGGCCTGGTTCTGGAATGTACCCTGGCAGGGGTGGTATTGGTGGTGGTGGCAGTATGTGGATAGG
GCCTGATGACCCTAGATGGTTCGGTGGAGATAGAGAAGGTCTTCGTTTCCCTGGAGCACAACCAGGCGTTCCTCCTGGTGCTCGTTTCGATCCATACGGA
CCTCCTGGGATTCCAGGTTTCGAACCTGATCGGTTTACTAGGGGTCCAGGCAGGGGTGGAAGAGGAAGGAATCCAAACCCGGACATGGAGCAGCCTGGAA
GTGGTTTTGATTACATCTAA
AA sequence
>Lus10032056 pacid=23161122 polypeptide=Lus10032056 locus=Lus10032056.g ID=Lus10032056.BGIv1.0 annot-version=v1.0
MNDKLMVSALPADKDSKSAAEPLHLEISVNDYAGEDGGSNYSLQFKNFDKLITNLNVEVLSKLGSSSQSGSSSRSTRLVLLTFSSLLLLGCDTLCSHLSD
IDRHVQSEPRSGLPEQENPQFHPQFDPSGVIVPPIPPFHFDDTVPGPGSGMYPGRGGIGGGGSMWIGPDDPRWFGGDREGLRFPGAQPGVPPGARFDPYG
PPGIPGFEPDRFTRGPGRGGRGRNPNPDMEQPGSGFDYI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G53970 proteasome inhibitor-related (... Lus10032056
[exp]
0 1
AT3G02510 Regulator of chromosome conden... Lus10033543
[exp]
11.0 0.7329
AT5G63450 CYP94B1 "cytochrome P450, family 94, s... Lus10014741
[exp]
27.7 0.7314
AT5G17350 unknown protein Lus10017620
[exp]
48.4 0.7157
AT1G03910 unknown protein Lus10035324
[exp]
65.7 0.7244
AT3G01170 Ribosomal protein L34e superfa... Lus10005234
[exp]
85.2 0.7202
AT2G26975 Ctr copper transporter family ... Lus10040726
[exp]
112.0 0.6945
AT5G13530 KEG KEEP ON GOING, protein kinases... Lus10020272
[exp]
201.4 0.6861
AT3G59280 TXR1 THAXTOMIN A RESISTANT 1, Prote... Lus10032532
[exp]
219.3 0.6845

Lus10032056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.