Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14210 784 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 488 / 2e-161 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63410 432 / 3e-141 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 310 / 4e-94 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 284 / 2e-84 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 211 / 8e-57 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 203 / 3e-54 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07280 201 / 2e-53 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G79620 184 / 3e-48 Leucine-rich repeat protein kinase family protein (.1) AT4G28650 184 / 6e-48 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032059 [exp] 1420 / 0 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 1398 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 970 / 0 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041589 [exp] 694 / 0 AT5G14210 520 / 2e-176 Leucine-rich repeat protein kinase family protein (.1) Lus10020303 [exp] 469 / 3e-154 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10005689 [exp] 452 / 7e-148 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 426 / 1e-137 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 423 / 1e-136 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029659 [exp] 348 / 4e-110 AT5G63410 584 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333300 [exp] 987 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 769 / 0 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 751 / 0 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 515 / 3e-172 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 467 / 3e-153 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 442 / 4e-144 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 356 / 1e-111 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G139000 [exp] 204 / 2e-54 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 194 / 2e-51 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 194 / 3e-51 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10032058 pacid=23161114 polypeptide=Lus10032058 locus=Lus10032058.g ID=Lus10032058.BGIv1.0 annot-version=v1.0 ATGGGGTGGTTAAACTGGTTGCTCCTGTTGTTTCTCTCCTGGGTTTACTTCTGTGTTTCACTTTCCCATGAGCTGCAAACCAACCAAGCTCAGTACCTAA TGCAACTGAGGAAGCATTTGGAGTACCCTCCACAGTTAAGCGCTTGGGAGAGCTACGATAACAATGGTGGTGACCTCTGCAACTTCTCATCCACTTCATT TCTGAGCATTCGCTGTGAAAACAATCTGGTTACAGAGCTCAAGATCATGGGAGGAGACAGGAAACTAATCAAGGTCAGTGATAATTTCAATGGCTTCCCA ATTCGAAGCCAGACTCTATCCGAGACTTTCTCAATTGATTCTTTGTTCACCACTTTGACAAGGCTGACCAGCTTGAAAGCTGTGTGCTTGGTGTCATTGG GGATTTGGGGGACGCTTCCTGATAAGGTTCACAGGCTATATTCTCTGGAACTTCTAGACTTGAGCTCGAATTTCATTTTTGGTTCAGTTCCAGCTCAATT GTCAAGAATGGTTAATCTTACTACCTTGGTTCTTGATAGCAACTACTTCAATGGAACTGTGCCTAATTGGCTGGATTCTTTACCAAACCTCACTGTTTTG AGCTTGAAGAGTAACCGTTTTGAGGGCCAGTTTCCTTCTTCAGTTTACAGAATCAGAAGCTTAACTGATATTGCGCTGTCCCACAATCAGCTCAGTGGGG AACTCCCTGATTTGACTGAGTTGACCAATCTGCATGTATTGGACTTGAGAGACAATGAATTTGAGTCTCACTTGCCTCTCATGCCAAAAGGGTTGGTCAC TCTTCTCTTAAGCAACAATTCATTTTCAGGTGAAGTTCCAGCTCAGTTTGGACAGCTGAGCCAGCTGCAACACTTGGATTTGTCGTTGAATAATCTCAGT GGAACTCCTCCTTCTTCCTTGTTCTCTTTGCCAAACATAAGTTATCTGAACTTAGCATCCAACAAGCTAACCGGGTCGCTTCCAATTCATCTCAACTGTG GTTCCAAGCTTGGTTTTGTTGACATCTCCATGAACAAGTTAATTGGTGGACTTCCATCTTGTATGGAGAGTAGTTTAAATAAGAGAGTGGTGAAATCTGG TGGGAATTGCTTATCCAGTGACGCACCAGATCAGCAGAAGGAGTCAGAGTGTACTAAAGATGCCAGAAAGGAGACCGGACATTCGAGGCTTAGATCAATT TGGATAATAATGGCTGTCATTGGTGGAACTCTTGTTGTTCTTATTTCAGTATTGGCCTGTGGGGTTATCTGCATTCGTAGAACATGTCGTCCTAGGAAAA CGTTAGAAAACAATATAATCTCTAAGGCTATGGTGGATAACAGTAATCATCATCATCCACCACCTACTGGTGTTTCATCAACAGTCCTGGCAAATGCAAG ATTCATTTCAGAAGCAGCCAAGCTAGGGACACAAGCTGGTACTCCTGTATGTCGTGTGTTTTCCTTGGAAGAGCTTAAGGATGCTACAAACAACTTTCAT TCCTCTTCTTTTATGGGTGAAGGCTCTTCTGGGAAGGTTTACAAAGGAAGATTGGAGAATGGTAACCTTATAGCCATACGATGCGTCGCTTTGTTCAAGA AACAGTCTATCCAAAACCTCAAAGTTAGACTGGATTTACTATCCAAGCTTCACCATCCACATCTGGTAACTCTCTTAGGCCACTGTATTGACAGCAGTAC TGGACTGGATGACAGCAACAAAGTCTTCCTTGTGTACGAATATTTGCCTAACGGAAATTATCGTTCCCATTTAGCAGAAAACTACCCTGAGAAAGCACTC AGATGGCCGGAAAGACTCGCAATTCTGATAGGTGTTGCCAAGGCTGTGCAGTTTCTGCATGCTGGTCTTGTTCCTGGGACATTCAAGAACCGACTGAAAA CAAACAATATACTGCTTGACGAGCACCAGATTGCAAAGCTCAGTGACTATGGAATGCCTATCCTCACTGAAGACTTTGAAAAACTTGAGGCTAAGGGAGA GGGAACTAAGTCAAGTTACAGAATAAACTTGGAGGATGATGTGTACAACTTCGGGTTTATACTACTCGAATCACTTGTTGGGCCTATTGTGACTGGGAAA GGAGAAACCTTTCTGCTGAATGAAATGGCATCCTTCGGCAGCCAAGATGGTCGAAGAAGAATCGTGGATCCGATCGTTCTAACTACATGCTCACAGGAGT CTCTTTCCATAATCGTTTCGATCACGAGCAAATGCATATCTCCCGAATCTTCGCTTAGGCCTTCTTTCGAGGATGTACTCTGGAACTTACAGTATGCAGC TCAGGTTCAGGCCACAGCTGATGCAGACCAGAGATCAGATTCAACCTCATAA
AA sequence Show only first row Show all	>Lus10032058 pacid=23161114 polypeptide=Lus10032058 locus=Lus10032058.g ID=Lus10032058.BGIv1.0 annot-version=v1.0 MGWLNWLLLLFLSWVYFCVSLSHELQTNQAQYLMQLRKHLEYPPQLSAWESYDNNGGDLCNFSSTSFLSIRCENNLVTELKIMGGDRKLIKVSDNFNGFP IRSQTLSETFSIDSLFTTLTRLTSLKAVCLVSLGIWGTLPDKVHRLYSLELLDLSSNFIFGSVPAQLSRMVNLTTLVLDSNYFNGTVPNWLDSLPNLTVL SLKSNRFEGQFPSSVYRIRSLTDIALSHNQLSGELPDLTELTNLHVLDLRDNEFESHLPLMPKGLVTLLLSNNSFSGEVPAQFGQLSQLQHLDLSLNNLS GTPPSSLFSLPNISYLNLASNKLTGSLPIHLNCGSKLGFVDISMNKLIGGLPSCMESSLNKRVVKSGGNCLSSDAPDQQKESECTKDARKETGHSRLRSI WIIMAVIGGTLVVLISVLACGVICIRRTCRPRKTLENNIISKAMVDNSNHHHPPPTGVSSTVLANARFISEAAKLGTQAGTPVCRVFSLEELKDATNNFH SSSFMGEGSSGKVYKGRLENGNLIAIRCVALFKKQSIQNLKVRLDLLSKLHHPHLVTLLGHCIDSSTGLDDSNKVFLVYEYLPNGNYRSHLAENYPEKAL RWPERLAILIGVAKAVQFLHAGLVPGTFKNRLKTNNILLDEHQIAKLSDYGMPILTEDFEKLEAKGEGTKSSYRINLEDDVYNFGFILLESLVGPIVTGK GETFLLNEMASFGSQDGRRRIVDPIVLTTCSQESLSIIVSITSKCISPESSLRPSFEDVLWNLQYAAQVQATADADQRSDSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	0	1
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	1.0	0.9887
					Lus10016109 [exp]	1.4	0.9066
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10019969 [exp]	2.8	0.8664
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	3.0	0.8736
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10018499 [exp]	3.7	0.8317
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	5.3	0.8600
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	5.5	0.8636
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10023586 [exp]	6.6	0.8422
AT3G14980			Acyl-CoA N-acyltransferase wit...		Lus10026374 [exp]	12.7	0.8147
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10042398 [exp]	18.5	0.8262

Compare expression of checked genes

Lus10032058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.