Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14210 780 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 486 / 1e-160 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63410 430 / 1e-140 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 308 / 2e-93 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 287 / 1e-85 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 214 / 1e-57 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07280 206 / 3e-55 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 203 / 3e-54 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G79620 185 / 2e-48 Leucine-rich repeat protein kinase family protein (.1) AT1G30570 180 / 5e-47 HERK2 hercules receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032058 [exp] 1432 / 0 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 1367 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 993 / 0 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041589 [exp] 689 / 0 AT5G14210 520 / 2e-176 Leucine-rich repeat protein kinase family protein (.1) Lus10020303 [exp] 459 / 2e-150 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10005689 [exp] 442 / 7e-144 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 419 / 5e-135 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 415 / 1e-133 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029659 [exp] 345 / 1e-108 AT5G63410 584 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333300 [exp] 974 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 762 / 0 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 751 / 0 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 500 / 2e-166 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 449 / 3e-147 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 451 / 6e-147 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 355 / 5e-111 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G139000 [exp] 201 / 2e-53 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 197 / 4e-52 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 196 / 9e-52 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10032059 pacid=23161074 polypeptide=Lus10032059 locus=Lus10032059.g ID=Lus10032059.BGIv1.0 annot-version=v1.0 ATGGGGTGGTTAAACTGGTTGCTCCTGTTGTTTCTCTCCTGGGTTTACTTCTGTGTTTCACTTTCCCATGAGCTGCAAACCAACCAAGCTCAGTACCTAA TGCAACTGAGGAAGCATTTGGAGTACCCTCCACAGTTAAGCGCTTGGGAGAGCTACGATAACAATGGTGGTGACCTCTGCAACTTCTCATCCACTTCATT TCTGAGCATTCGCTGTGAAAACAATCTGGTTACAGAGCTCAAGATCATGGGAGGAGACAGGAAACTAATCAAGGTCAGTGATAATTTCAATGGCTTCCCA ATTCGAAACCAGACTCTATCCGAGACTTTCTCAATTGATTCTTTGTTCACCACTTTGACAAGGCTGACCAGTTTGAAAGCTGTGTGCTTTGTGTCATTGG GGATTTGGGGGACGCTTCCTGATAAGGTTCACAGGCTATATTCTCTGGAACTTCTAGACTTGAGCTCGAATTTCATTTTTGGTTCAGTTCCAGCTCAATT GTCAAGAATGGTTAATCTTACTACCTTGGTTCTTGATAGCAACTACTTCAATGGAACTGTGCCTAATTGGCTGGATTCTTTACCAAACCTCACTGTTTTG AGCTTGAAGAGTAACCGTTTTGAGGGCCAGTTTCCTTCTTCAGTTTACAGAATCAGAAGCTTAACTGATATTGCGCTGTCCCACAATCAGCTCAGTGGGG AACTCCCTGATTTGACTGAGTTGACCAATCTGCATGTATTGGACTTGAGAGACAATGAATTTGAGTCTGAATTGCCTCTCATGCCAAAAGGGTTAGTCAC TGTTCTCTTAAGCAACAATTCATTTTCAGGTGAAGTTCCAGCTCAATTTGGACAGCTGAACCAACTGCAACACCTGGATTTGTCTTTGAATAATCTCAGT GGAACCCCTCCTTCTTCCTTGTTCTCTTTGCTAAGCATCAGTTATCTGAACTTAGCATCCAATAAGCTAAGTGGATCCCTTCCCATTCATCTCAACTGTG GTTCCAAGCTTGGTTTTGTTGACATCTCCATGAACAAGTTAATTGGTGGACTTCCATCTTGTATGGAGAGTAGTTTAAATAAGAGAGTGGTGAAATCTGG TGGGAATTGCTTATCCAGTGACGCACCAGATCAGCAGAAGGAGTCAGAGTGTACTAAAGATGCAAGAAAGGAGACCGGACATTCAAGGCATAGATCAATT TGGATAATAATGGCAGTCATTGGAGGAACTCTTGTTGTTCTTATTGCAGTATTGGCATGTGGGGTTATCTGTATTCGTAGAACATGTCGTCCTAGGAAAA CTTTAGAAAATAATATAATCTCTAAGGCTGTGGTGGATAGCAATAACCATCATCATCATCCACCACCTACTGGTGTTTCATCAGAAGTCCTGGCAAATGC AAGATTCATTTCAGAAGCAGCCAAGCTAGGGACACAAGCTGGTACTCCTGTATGTCGTGTGTTTTCCTTGGAAGAGCTTAAGGATGCTACAAACAACTTT CATTCCTCTTCTTTTATGGGTGAAGGCTCTTCTGGGAAGGTTTACAAAGGAAGATTGGAGAATGGTAACCTTATAGCCATACGATGCGTCGCTTTGTTCA AGAAACAGTCTATCCAAAACCTCAAAGTTAGACTGGATTTACTATCCAAGCTTCACCATCCACATCTGGTAACTCTCTTAGGCCACTGTATTGACAGCAG TACTGGACTGGATGACAGCAACAAAGTCTTCCTTGTGTACGAATATTTGCCTAACGGAAATTATCGTTCCCATTTAGCAGAAAACTACCCTGAGAAAGCA CTCAGATGGCCGGAAAGACTCGCAATTCTGATAGGTGTTGCCAAGGCTGTGCAGTTTCTGCATGCTGGTCTTGTTCCTGGGACATTCAAGAACCGACTGA AAACAAACAATATACTGCTTGACGAGCACCAGATTGCAAAGCTCAGTGACTATGGAATGCCTATCCTCACTGAAGACTTTGAAAAACTTGAGGCTAAGGG AGAGGGAACTAAGTCAAGTTACAGAATAAACTTGGAGGATGATGTGTACAACTTCGGGTTTATACTACTCGAATCACTTGTTGGGCCTATTGTGACTGGG AAAGGAGAAACCTTTCTGCTGAATGAAATGGCATCCTTCGGCAGCCAAGATGGTCGAAGAAGAATCGTGGATCCGATCGTTCTAACTACATGCTCACAGG AGTCTCTTTCCATAATTGTTTCGATCACGACCAAATGCCTATCTCCCGATTCTTCGCTTAGGCCTTCTTTCGAGGATGTACTCTGGAACTTGCAGTATGC AGCTCAGGTTCAGGCCACAGCTGATGCAGACCAGAGATCAGATTCAACCTCATAA
AA sequence Show only first row Show all	>Lus10032059 pacid=23161074 polypeptide=Lus10032059 locus=Lus10032059.g ID=Lus10032059.BGIv1.0 annot-version=v1.0 MGWLNWLLLLFLSWVYFCVSLSHELQTNQAQYLMQLRKHLEYPPQLSAWESYDNNGGDLCNFSSTSFLSIRCENNLVTELKIMGGDRKLIKVSDNFNGFP IRNQTLSETFSIDSLFTTLTRLTSLKAVCFVSLGIWGTLPDKVHRLYSLELLDLSSNFIFGSVPAQLSRMVNLTTLVLDSNYFNGTVPNWLDSLPNLTVL SLKSNRFEGQFPSSVYRIRSLTDIALSHNQLSGELPDLTELTNLHVLDLRDNEFESELPLMPKGLVTVLLSNNSFSGEVPAQFGQLNQLQHLDLSLNNLS GTPPSSLFSLLSISYLNLASNKLSGSLPIHLNCGSKLGFVDISMNKLIGGLPSCMESSLNKRVVKSGGNCLSSDAPDQQKESECTKDARKETGHSRHRSI WIIMAVIGGTLVVLIAVLACGVICIRRTCRPRKTLENNIISKAVVDSNNHHHHPPPTGVSSEVLANARFISEAAKLGTQAGTPVCRVFSLEELKDATNNF HSSSFMGEGSSGKVYKGRLENGNLIAIRCVALFKKQSIQNLKVRLDLLSKLHHPHLVTLLGHCIDSSTGLDDSNKVFLVYEYLPNGNYRSHLAENYPEKA LRWPERLAILIGVAKAVQFLHAGLVPGTFKNRLKTNNILLDEHQIAKLSDYGMPILTEDFEKLEAKGEGTKSSYRINLEDDVYNFGFILLESLVGPIVTG KGETFLLNEMASFGSQDGRRRIVDPIVLTTCSQESLSIIVSITTKCLSPDSSLRPSFEDVLWNLQYAAQVQATADADQRSDSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	0	1
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	1.0	0.9887
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	2.0	0.8783
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	2.4	0.8853
					Lus10016109 [exp]	3.2	0.8878
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10023586 [exp]	3.7	0.8469
AT2G40020			Nucleolar histone methyltransf...		Lus10040211 [exp]	5.1	0.7936
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10019969 [exp]	5.5	0.8474
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	6.7	0.8483
AT5G02440			unknown protein		Lus10025345 [exp]	8.5	0.8335
AT3G14980			Acyl-CoA N-acyltransferase wit...		Lus10026374 [exp]	8.7	0.8149

Compare expression of checked genes

Lus10032059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.