Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14605 513 / 3e-179 Mitochondrial transcription termination factor family protein (.1) AT2G03050 110 / 4e-27 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G34620 104 / 9e-25 Mitochondrial transcription termination factor family protein (.1) AT2G21710 107 / 2e-24 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT2G44020 103 / 2e-23 Mitochondrial transcription termination factor family protein (.1) AT1G78930 102 / 6e-23 Mitochondrial transcription termination factor family protein (.1) AT3G18870 98 / 1e-22 Mitochondrial transcription termination factor family protein (.1) AT4G02990 98 / 2e-21 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G36000 92 / 3e-20 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT5G55580 92 / 2e-19 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035227 [exp] 937 / 0 AT4G14605 518 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 124 / 2e-31 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10029422 [exp] 112 / 5e-27 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10035714 [exp] 112 / 3e-26 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 111 / 5e-26 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10030451 [exp] 108 / 6e-26 AT2G03050 283 / 3e-95 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10032120 [exp] 107 / 1e-25 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10026612 [exp] 107 / 1e-25 AT2G03050 285 / 4e-96 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10004219 [exp] 107 / 2e-25 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067600 [exp] 617 / 0 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 114 / 4e-27 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 110 / 1e-25 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 108 / 1e-24 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 103 / 3e-24 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.011G081400 [exp] 100 / 2e-23 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.006G205000 [exp] 99 / 2e-22 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.001G361800 [exp] 99 / 4e-22 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G150600 [exp] 96 / 5e-22 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 97 / 6e-22 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10032061 pacid=23161169 polypeptide=Lus10032061 locus=Lus10032061.g ID=Lus10032061.BGIv1.0 annot-version=v1.0 ATGACGAAGCATTCTACACCAGTCATTTTTAGTAGAGGATCATTTTTCCTGTTCTTTGTGAGCAGATCGCAACTCAGTTTCTCCACAGATATGAGAGCTT TAGTCTCAAACCGATGCTCTTCTTCTTCCTCAATTGGCTTCACATTTCTTCTCTCTCGGCCAGTTTTCCCAACTTCCAGGAACCGGCTCTTCCTCCCTGA TAAAGCATTCCTTTTCTTCCAGCCAAAGTTAGGTGTTGGGATAGTTCGATTATCCGGGCCAAGATCGGCACCAGAAACATTGCTGACTGCAGAAAAAGAA GAAGCAAAAGCTCTTCTGACATTGTTCTTGAAAGAACATGGTGTCAGCAAGTTAGTTGCTTCGAGAACAGCTAACAAGTCTGATGTTTTCATTGACCACC TCATCTCAAAGCTTCATTCTCTCCACAGAACTCGGTATCTAGTAGGAAGAGAACTTTCAACTCTTGAGATCAGGGAATCTCTTATACCTTACCTCGAGAC TCTCCAAGAAGAACATGGAAACATTCTGGTTGATGTGGTGGAGAGCTTCCCAGATCTCCCTGACAAAGAGACAGCAGCAGCTTCTGTTGCTACTTCCACA GGTACTACTGCTCGTCCCGAGATAACACTTACTCCGGAGAAGTTACACGCCATTGCGAAAGTGAGTGAGAAAGGCCCAAGTGGAGACCTACCACACCACA TTCTCTACCTTATAGAGCTTGGCCTAGATATGGAACGGATCAAAGGGATCACAAGAAGGTTCCCGGCCTTCGCACACTACACTTTAGAAGGCAAAATCAG GCCGGTAGTCGAGTTCCTTATCGATCTCGGAATACCCAAATCAAGCATCCCTCTCGTCCTTACCAAAAGGCCTCAACTTTGTGGGATTAGTCTCTCCGAA AACCTCATACCGACCATGAAGCTCTTGGAGAACTTGGGAGTCGACAAGGGTCAGTGGGCGAAAGTGATCCACCGATGCCCTGCACTTCTCACTTATAGCA AGCACAAGGTTGAATCGGTCGTGCAATTCCTCGACGAAATGGGTGTGTCAGCTGACAACATAGGGAAGCTCCTTACTCGGTATCCTAACATTATGAGTTA CAGTGTGGAGGACAATCTTCGACCGACAGCTGAGTACTTTAGGAGCTCTTTGGATGTGGATGTTGGTCTGCTTCTCCACAGGTCTCCTTCAACTTTCGGC CTTAGTGTGGAGAAGAACTTGAAGCCCATTACAGAGTTCTTCTTAGAGAAAGGGTACACGAAGGAGGAAATCAGGACTATGATTTCGAGGTATGGACCTC TTTACACTTTCAGCTTGGAGGACAATCTGATGTCCAAATGGGAGTTCTTTCTGACCATGGATTACTCGAAAGAAGAGCTTGTAAAATTCCCGCAGTACTT TGGTTACAGCCTGGAGAAAAGGATTAAACCCAGGTATGCTCTGGTTAGGGAGTATGGAGTGAAGTTGCTTCTGAACCAAGTCTTGTCATTATCTAGAGCC AAATTTGATACACTTTTGGAGAAGAAGTTGGCAAAGATGAAGAAGAACACTTCCCCTGATATGGGATAG
AA sequence Show only first row Show all	>Lus10032061 pacid=23161169 polypeptide=Lus10032061 locus=Lus10032061.g ID=Lus10032061.BGIv1.0 annot-version=v1.0 MTKHSTPVIFSRGSFFLFFVSRSQLSFSTDMRALVSNRCSSSSSIGFTFLLSRPVFPTSRNRLFLPDKAFLFFQPKLGVGIVRLSGPRSAPETLLTAEKE EAKALLTLFLKEHGVSKLVASRTANKSDVFIDHLISKLHSLHRTRYLVGRELSTLEIRESLIPYLETLQEEHGNILVDVVESFPDLPDKETAAASVATST GTTARPEITLTPEKLHAIAKVSEKGPSGDLPHHILYLIELGLDMERIKGITRRFPAFAHYTLEGKIRPVVEFLIDLGIPKSSIPLVLTKRPQLCGISLSE NLIPTMKLLENLGVDKGQWAKVIHRCPALLTYSKHKVESVVQFLDEMGVSADNIGKLLTRYPNIMSYSVEDNLRPTAEYFRSSLDVDVGLLLHRSPSTFG LSVEKNLKPITEFFLEKGYTKEEIRTMISRYGPLYTFSLEDNLMSKWEFFLTMDYSKEELVKFPQYFGYSLEKRIKPRYALVREYGVKLLLNQVLSLSRA KFDTLLEKKLAKMKKNTSPDMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	0	1
AT4G14605			Mitochondrial transcription te...		Lus10035227 [exp]	1.0	0.9726
AT1G53250			unknown protein		Lus10028136 [exp]	2.0	0.9373
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	3.9	0.9315
AT2G05310			unknown protein		Lus10001175 [exp]	5.5	0.9305
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10029979 [exp]	6.7	0.9335
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	7.1	0.9055
AT3G10540			3-phosphoinositide-dependent p...		Lus10037921 [exp]	8.1	0.9091
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	8.7	0.9321
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	9.4	0.9250
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	9.5	0.9274

Compare expression of checked genes

Lus10032061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.