Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25440 212 / 5e-65 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 212 / 6e-65 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G49200 159 / 4e-45 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 154 / 1e-42 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT2G26490 74 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 67 / 3e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 67 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 65 / 1e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 63 / 8e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 63 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014612 [exp] 453 / 2e-161 AT5G40880 131 / 3e-35 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) Lus10014598 [exp] 446 / 7e-159 AT4G25440 134 / 2e-36 zinc finger WD40 repeat protein 1 (.1) Lus10032066 [exp] 447 / 7e-157 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10014595 [exp] 419 / 8e-142 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10021656 [exp] 307 / 3e-101 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10001652 [exp] 260 / 1e-86 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021648 [exp] 261 / 8e-84 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1) Lus10021640 [exp] 248 / 4e-82 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1) Lus10021655 [exp] 243 / 8e-78 AT4G25440 169 / 3e-48 zinc finger WD40 repeat protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G137200 [exp] 214 / 1e-65 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.012G134800 [exp] 208 / 2e-63 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 203 / 1e-60 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G109500 [exp] 74 / 2e-14 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 71 / 3e-13 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 65 / 2e-11 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 63 / 8e-11 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 63 / 8e-11 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 63 / 9e-11 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 62 / 2e-10 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10032062 pacid=23161144 polypeptide=Lus10032062 locus=Lus10032062.g ID=Lus10032062.BGIv1.0 annot-version=v1.0 ATGGTTGTAAACACCGACTCCTCCGGGCGAATTAGGGTTTCTGGACAAAGTCAGAGGAATAACGGGATCGTCTGTCGATATTGGAAACAGTCGAGGTGTG ATCGGAACCCCTGCAGGTTCCTCCACGAAGACTCGCCGTCTGCATCTCCGGCGACCTACTACTCATCACAGCCTCGATCCAATGTTTACGTTCGCAGATC TCAAAGTAAGCCCCCGTCTGCGCCTATCGGTGACCACCAGAGAAATTCCCATGCTACTCCTCAGAAACCGAAAGTTGTCGATGAGATCGCTGAAGACGAT GGGAAGAGCAAAGAGACGGCTTGTCGAGAGTGGATCTCCGGGNNNNNNNNNNTGAACGCTCTGGCTCTTTTCGTGGGTGTTGAGTGCGCTCTCACCGGTC CAACTGGCCAAATATACGCATTGGCAATTGGTATGGGGGTTATCTTCGCTGGAGCTCAAGATGGTATAATTTACAGTTGGAAGACTGCTGCCAACGAGCA AGGGAATTTTATGTTCCAGCCAGCTGCAGCACTAATCGGCCACACAAGCGCAGTTGTTTCCCTGAAAAATGAAGGTGGAAGGTTGTTCTCCGGTTCCATG GATGGAACGATCAAAGTCTGGGACGGCAGCAATTTCCAGTGCCTGGAAACTTTCAAGGGGCATGACGAAGCAGTGATGTCTCTACTCTGCTTCTCCGAGT ACCTTCTATCCTGCTCCCTGGATTGCAAGATCAAAGTATGGGGCCGCAGCAATGGAGAAGGGAGGTTTGAATTGATGCATACCCATGAAGAAGCAGATGG TGCTCTGGCCTTGTGTGGAGTCGATGTGAATGGGAAACCGATGTTGTTATGCTCCTGGAACAACAATTCAGTCGGTGTGTACGAGCTTCCATCCTTTGCA GAGAAGGGAAGAATGTACACGACAGGTGAAGTGAGGAGCATAGGAGGAGGTCCTGATGGGATGGTATTCACCGGAGATGCTGCTGGTCTTGTTACTGTTT GGAGACTAAGACACCAAGTGGAAATGGAACAGTAG
AA sequence Show only first row Show all	>Lus10032062 pacid=23161144 polypeptide=Lus10032062 locus=Lus10032062.g ID=Lus10032062.BGIv1.0 annot-version=v1.0 MVVNTDSSGRIRVSGQSQRNNGIVCRYWKQSRCDRNPCRFLHEDSPSASPATYYSSQPRSNVYVRRSQSKPPSAPIGDHQRNSHATPQKPKVVDEIAEDD GKSKETACREWISGXXXXNALALFVGVECALTGPTGQIYALAIGMGVIFAGAQDGIIYSWKTAANEQGNFMFQPAAALIGHTSAVVSLKNEGGRLFSGSM DGTIKVWDGSNFQCLETFKGHDEAVMSLLCFSEYLLSCSLDCKIKVWGRSNGEGRFELMHTHEEADGALALCGVDVNGKPMLLCSWNNNSVGVYELPSFA EKGRMYTTGEVRSIGGGPDGMVFTGDAAGLVTVWRLRHQVEMEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10032062 [exp]	0	1
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10037286 [exp]	3.3	0.7872
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	4.7	0.7866
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10018527 [exp]	13.9	0.7610
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10032184 [exp]	15.9	0.7172
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10004214 [exp]	16.4	0.7485
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10002059 [exp]	19.3	0.7573
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025322 [exp]	35.2	0.7516
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	35.3	0.7387
					Lus10039892 [exp]	36.2	0.7379
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015749 [exp]	39.7	0.7291

Compare expression of checked genes

Lus10032062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.