Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01790 269 / 1e-91 Ribosomal protein L13 family protein (.1.2) AT1G78630 74 / 1e-15 EMB1473 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014597 [exp] 365 / 1e-129 AT3G01790 309 / 3e-108 Ribosomal protein L13 family protein (.1.2) Lus10005553 [exp] 79 / 3e-17 AT1G78630 332 / 8e-116 embryo defective 1473, Ribosomal protein L13 family protein (.1) Lus10041940 [exp] 67 / 6e-13 AT1G78630 317 / 4e-110 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066000 [exp] 299 / 1e-103 AT3G01790 266 / 3e-91 Ribosomal protein L13 family protein (.1.2) Potri.001G334000 [exp] 288 / 5e-99 AT3G01790 299 / 2e-104 Ribosomal protein L13 family protein (.1.2) Potri.011G106100 [exp] 83 / 9e-19 AT1G78630 342 / 3e-120 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.001G384600 [exp] 82 / 1e-18 AT1G78630 351 / 1e-123 embryo defective 1473, Ribosomal protein L13 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00572 [flax] [poplar] Ribosomal_L13 Ribosomal protein L13
Representative CDS sequence Show only first row Show all	>Lus10032063 pacid=23161197 polypeptide=Lus10032063 locus=Lus10032063.g ID=Lus10032063.BGIv1.0 annot-version=v1.0 ATGAGGCGGTCCCAAATATTAGAGTTGGGTAATTACGCGGTTTCAAAACTATCATGCCCGACCTATTTCGTTTCCTCAATGGGTGAATGCTTTGTGCGTG AGAACGAGCAACATTATTACATACCTGCGTCGGAAATGGCGACCCAAGCAGCTACTGCCTTCAATGGCAACCTAAAGAAAGCACTTGCTGGAATTAAACG TATCAAGCTTGATGGTCTGCGGTGGAGAGTCTTTGATGCTAAAGGCCAGGTACTTGGCCGACTAGCATCTCAGCTTTCAATTGTTCTTCAAGGCAAGGAC AAGCCAACGTATGCACCTAATCGCGACGACGGAGATATGTGCATTGTCGTTAATGCAAAGGATATTTCAGTTACAGGAAGGAAAATGACCGATAAGGTTT ATCACTGGCATACAGGGCAAGATACTCTAGGCTATATTGGACACCTCAAGGAAAGGACCTTAAAAGATCAGATGGCCAAGGACCCAACAGAAGTCATTCG CAAAGCTGTGATGCGTATGCTCCCGAGAAATAAATTGCGTGATGACAGGGATCTAAAGCTGAGGATTTTCGCAGACGGTGAGCACCCCTTCCATGATCGG CCTGTTGAACCGTACGTGATGCCTCCCAGGACAGTTAGAGAAATGCGACCACGTGCCAGACGAGCCATGGTTCGAGCTGAGAAAAAGGCTGAGCTACAAG CTCAGGGCGGCAGCAACACCAGAAAACATAGAAAGAAGGAAGCTGAAGAGGGGCAAACCGCATAA
AA sequence Show only first row Show all	>Lus10032063 pacid=23161197 polypeptide=Lus10032063 locus=Lus10032063.g ID=Lus10032063.BGIv1.0 annot-version=v1.0 MRRSQILELGNYAVSKLSCPTYFVSSMGECFVRENEQHYYIPASEMATQAATAFNGNLKKALAGIKRIKLDGLRWRVFDAKGQVLGRLASQLSIVLQGKD KPTYAPNRDDGDMCIVVNAKDISVTGRKMTDKVYHWHTGQDTLGYIGHLKERTLKDQMAKDPTEVIRKAVMRMLPRNKLRDDRDLKLRIFADGEHPFHDR PVEPYVMPPRTVREMRPRARRAMVRAEKKAELQAQGGSNTRKHRKKEAEEGQTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01790			Ribosomal protein L13 family p...		Lus10032063 [exp]	0	1
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	6.4	0.9497
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	6.6	0.9476
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	6.9	0.9469
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10040451 [exp]	7.1	0.9400
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	15.2	0.9415
AT2G47790			Transducin/WD40 repeat-like su...		Lus10001029 [exp]	15.4	0.9352
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Lus10001767 [exp]	15.6	0.9233
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	16.5	0.9278
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002860 [exp]	16.6	0.9373
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10016516 [exp]	16.7	0.9224

Compare expression of checked genes

Lus10032063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.