Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14240 328 / 3e-114 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014596 [exp] 415 / 2e-148 AT5G14240 361 / 4e-127 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066200 [exp] 204 / 8e-66 AT5G14240 214 / 2e-69 Thioredoxin superfamily protein (.1) Potri.001G334100 [exp] 142 / 1e-41 AT5G14240 175 / 2e-54 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02114 [flax] [poplar] Phosducin Phosducin
Representative CDS sequence Show only first row Show all	>Lus10032064 pacid=23161264 polypeptide=Lus10032064 locus=Lus10032064.g ID=Lus10032064.BGIv1.0 annot-version=v1.0 ATGGCGGATTATCACTTTGTGTACAGGGATGTCGATGGAACGTCGACTCAGTGGGACGATATTCAGAGGAAGCTAGGGAATTTGCCCGAGAAGGCGCCGG CGTTCAAGCCTCCCGCTTATACTCCAACTCCTGATGAAGATTCGATCCCCAAGGATAAGGCGTGGATCGATGAGAAGACTGAAGAGGACCTTGAAGACAT GGAGGATGAGCTTGATGATGATCGTTTCCTGGAAGATTACAGGAAGAAGAGGTTGGCTGAGATGAAAGAAGCAGCTAAAGTTGCCAAGTTTGGATCAGTG GTTCCTATTTCAGGGTCAGATTTCGTGAGGGAGGTTTCACAAGCTCCACCTGAAGTTTGGGTCGTGGTGCTTCTCTACAAGGACGGGTATCAAGAATGCG GGGTGTTGCTTGGATGTCTGGAAGAATTGGCGAAGAGATACCCTGCCACAAAGTTTGTTAAGATAATCTCTACTGACTGTATTCCAAACTACCCAGATCG AAATCTACCCACTTTATTGGTCTACAACAATAGTGCAGTGAAGGCTAACTATGTAGGGATGCGAAGTTTTGGCAGGAGATGTACCCCTGAAAGTGTTGCA TTGGTTCTATGTCAATCAGACCCTGTGCTGAATGACGGCCAGAGTGGGAGCGATGCATCAAGCAAAGCCGTGATGGATGGTGTTAGGAGGCGTATCCTCG AGCGGGTTGTGAAGGACCACGAAGAACATGGTGATGATGACGGTTATTCTAGTGACTAG
AA sequence Show only first row Show all	>Lus10032064 pacid=23161264 polypeptide=Lus10032064 locus=Lus10032064.g ID=Lus10032064.BGIv1.0 annot-version=v1.0 MADYHFVYRDVDGTSTQWDDIQRKLGNLPEKAPAFKPPAYTPTPDEDSIPKDKAWIDEKTEEDLEDMEDELDDDRFLEDYRKKRLAEMKEAAKVAKFGSV VPISGSDFVREVSQAPPEVWVVVLLYKDGYQECGVLLGCLEELAKRYPATKFVKIISTDCIPNYPDRNLPTLLVYNNSAVKANYVGMRSFGRRCTPESVA LVLCQSDPVLNDGQSGSDASSKAVMDGVRRRILERVVKDHEEHGDDDGYSSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	0	1
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	1.7	0.8691
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	2.4	0.8467
AT3G18510			unknown protein		Lus10032475 [exp]	3.7	0.8506
AT2G46000			unknown protein		Lus10017790 [exp]	5.3	0.7904
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	5.9	0.8324
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10029059 [exp]	6.0	0.8255
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032606 [exp]	7.9	0.8154
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10000062 [exp]	8.6	0.7625
AT5G11600			unknown protein		Lus10001603 [exp]	9.5	0.8053
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	9.9	0.8247

Compare expression of checked genes

Lus10032064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.