Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14250 503 / 6e-177 CSN3, FUS11, COP13 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT1G75990 51 / 1e-06 PAM domain (PCI/PINT associated module) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014595 [exp] 771 / 0 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10022337 [exp] 698 / 0 AT5G14250 570 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10041586 [exp] 571 / 0 AT5G14250 450 / 2e-154 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334200 [exp] 634 / 0 AT5G14250 507 / 1e-179 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.017G066300 [exp] 617 / 0 AT5G14250 522 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10032065 pacid=23161081 polypeptide=Lus10032065 locus=Lus10032065.g ID=Lus10032065.BGIv1.0 annot-version=v1.0 ATGGAGAAGCGGAACGAAGCAAGTAAGAGCAAAATTGAGGAGGCGCAGCAGCAAACTCCGAATGATCGGAAGCGAAAAATCGAACTCTCCGGTACAGAGC AAACGAGTTATACGACGATGAACGGAGTGGAATCTTTGGTGAAGCGAATCCAGGGGCTGTCGAGCAGCGCTAACGACCTGGCTGTACTTCACACTCACTT GAAACAAGCAGGCGAGACTCTTTATCGCGACTCTCATAGTTTGCGTCCTTTCCTTGATCAGCTTGACCCTGCGGTCCACTCTCTCGGATACCTCTATCTC CTAGATGCTTGTACTCCTGATTCAGTATCCAGGGAGCAGGCAGCAAGTCTGGTTTTGATTTCTGCAAGGTTCATCACCTCGTGCAGCACTGAGCAAATTC AGTTATCAGCCAATAAATTCATAGCCATTTGCAAGAAATTCAAGGATTTAGTTTTGTTAATCCATGCACCTCTACGTGGGGTGGCTCCGTTGCTGACAGC CGTGCGAAAGCTTCAATCTTCTTCAGAACATTTGACTACCTTGCATCCAGATTTTCTTGAACTTTGCTTGTTGACAAAGTGCTATAAAACTGGGCTTTCA CTTCTGGAAGACGATATTTTTGAAGTTGATCAGCCAAGGAACCTGTTTCTTTACTGTTATTACGGAGGGATGATTTGCATTGGGCAAAAGCATTTCAAGA AAGCCTTGGAGCTTCTACACAGTGTTGTGACTGCGCCAATGTCTCCACTAAGTGCTATAGCTGTAGAAGCATACAAGAAGTATGCATTAGTGTCTCTCAT TCACCATGGACAATTCTCATCCAGTCTTCCCAAGTACACTTCAAGTTCTGCTCAGAGAAATCTAAAGAATTTCTGTCAGGATGTTTCCTCTTTAGATATA TGGCCTGTTATTGAATGCACTTATTTCTCCTACTCTGATCAGCACTATATTGAGTTGGCCAATACATACGATACTGGGAAGATTGAAGAACTAGAGATGT ATGTTCAAAGGAACATAGAAAAGTTTGCTAGTGACAATAATCTGGGACTAGTGAAACAGGTTGTATCGTCCATGTATAAGAGAAATATACAGAGGCTGAC ACAAACTTACTTGACCCTCTCCCTGCAAGGTATAGCAGATACTGTTCAACTCAACAGTGCTAAGGAGGCAGAGATGCACGTCCTCCAAATGATCCAAAAT GGTGAAATATTTGCAACAATCAACCAGAAAGACGGTATGGTAAGCTTTCTTGAGGATCCTGAGCAGTACAAGACAGGTGGAATGGTCGATAATATCGACA GTTCCATTCAAAGGTTGATTAAACTGTCGACTAAGTTGACAGCAATGGATAATCAGATGTCATGCGATCCATTATACCTAGGAAAGGTTGGGATGGAGCG ACAGAGGTTCGACTTCGACGACCTAGACTCAGTTCCTCATAGATTGGTGCAGTTAGTGGTTAACTGA
AA sequence Show only first row Show all	>Lus10032065 pacid=23161081 polypeptide=Lus10032065 locus=Lus10032065.g ID=Lus10032065.BGIv1.0 annot-version=v1.0 MEKRNEASKSKIEEAQQQTPNDRKRKIELSGTEQTSYTTMNGVESLVKRIQGLSSSANDLAVLHTHLKQAGETLYRDSHSLRPFLDQLDPAVHSLGYLYL LDACTPDSVSREQAASLVLISARFITSCSTEQIQLSANKFIAICKKFKDLVLLIHAPLRGVAPLLTAVRKLQSSSEHLTTLHPDFLELCLLTKCYKTGLS LLEDDIFEVDQPRNLFLYCYYGGMICIGQKHFKKALELLHSVVTAPMSPLSAIAVEAYKKYALVSLIHHGQFSSSLPKYTSSSAQRNLKNFCQDVSSLDI WPVIECTYFSYSDQHYIELANTYDTGKIEELEMYVQRNIEKFASDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQGIADTVQLNSAKEAEMHVLQMIQN GEIFATINQKDGMVSFLEDPEQYKTGGMVDNIDSSIQRLIKLSTKLTAMDNQMSCDPLYLGKVGMERQRFDFDDLDSVPHRLVQLVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10032065 [exp]	0	1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10005185 [exp]	2.4	0.8834
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	4.2	0.8702
AT4G29490			Metallopeptidase M24 family pr...		Lus10008578 [exp]	4.2	0.8844
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10001691 [exp]	6.5	0.8760
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	9.2	0.8757
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	9.6	0.8767
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Lus10035851 [exp]	12.3	0.8616
AT1G12390			Cornichon family protein (.1)		Lus10006997 [exp]	13.3	0.8581
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	16.2	0.8806
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10021363 [exp]	17.6	0.8391

Compare expression of checked genes

Lus10032065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.