Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25440 343 / 6e-115 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 335 / 2e-111 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G40880 254 / 1e-79 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT5G49200 246 / 3e-77 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT3G18950 77 / 6e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 76 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 70 / 5e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 71 / 6e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 69 / 1e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 67 / 9e-12 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014595 [exp] 525 / 0 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10021656 [exp] 496 / 6e-174 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10021648 [exp] 452 / 4e-157 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1) Lus10032062 [exp] 435 / 2e-152 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10033255 [exp] 369 / 5e-124 AT5G51980 285 / 3e-91 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038890 [exp] 329 / 3e-110 AT5G51980 551 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034716 [exp] 310 / 2e-103 AT5G51980 217 / 5e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021655 [exp] 287 / 7e-94 AT4G25440 169 / 3e-48 zinc finger WD40 repeat protein 1 (.1) Lus10014612 [exp] 276 / 1e-90 AT5G40880 131 / 3e-35 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G137200 [exp] 340 / 2e-113 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.012G134800 [exp] 340 / 3e-113 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 308 / 5e-100 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G109500 [exp] 74 / 4e-14 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 74 / 4e-14 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 69 / 2e-12 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 66 / 2e-11 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 64 / 9e-11 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 64 / 1e-10 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 63 / 1e-10 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10032066 pacid=23161150 polypeptide=Lus10032066 locus=Lus10032066.g ID=Lus10032066.BGIv1.0 annot-version=v1.0 ATGGTTGTAAACACCGACTCCTCCGGGCGAATTAGCGTTTCTGGACAAAATCAGAGGAATAGCGGGATCGTCTGTCGATATTGGAAACAGGCGAGGTGTG ATCGGAACCCCTGTAGGTTCCTCCACGAAGACTCGCCGACTGCATCTCCAGCGACCTACTCATCACAGCCGCGATCCAATGTTTACGATCGCAGATCTCA GAGTAAACCCCCATCTGCGCCTATCGGTGACCACCGGAGAAATTCCCACGCTCAGAAACCGAAAGTTGTCGATGAGATCGGTGAAGACAATGGGAAGAGC AAAGAGACTGCTTGTCGAGAGTGGATCTCCGGGAATTGCTTTAGAGGAGATGAGTGCAAGTTTTCACACGCTTGGTTCCGTGGAGATGGATTGTCGATGA TGGGACGGCTTGATGGGCATGGTCATTCCGTTGTTTCCGGCCTTTGTTTTCCTCCTGGTAGTGATAAGCTCTTCTCAGGGAGCGGTGATGGTGTCATTCA AGTATGGGATTGCAACAGTGGTAAGGTTTTAGGTACTTTGAACGTTGGTGGGAAGATTGGGTGTTTGGTTATAGATGGCGATCTTCTATATGTTGGATTG CCAAATATGGTCAAGGCTCGGGACCTTCGCTCAGGTGATGAGTGCACTCTCACCGGTCCAACTGGCCAAATATACGCATTGGCAATTGGTATGGGGGTTA TCTTCGCTGGAGCTCAAGATGGTATAATTTACAGTTGGAAGACTGCTGCCAACGAGCAAGGGAATTTTATGTTCCAGCCAGCTGCAGCACTAATCGGCCA CACAAGCGCAGTTGTTTCCCTCAAAAATGAAGGTGGAAGGTTGTTCTCCGGTTCCATGGATGGAACGATCAAAGTCTGGGACGGCAGCAATTTCCAGTGC CTGGAAACTTTCAAGGGGCATGACGAAGCAGTGCTGTCTCTACTCTGCTTCTCCGAGTACCTTCTATCCTGCTCCCTGGATTGCAAGATCAAAGTATGGG GCCGCAGCAATGGAGAAGGGAGGTTTGAATTGATGCATACCCATGAAGAAGCAGATGGTGCTCTGGCCTTGTGTGGAGTCGATCTGAATGGGAAGCCGAT GTTGTTATGCTCCTGGAACAACGATTCAGTCGGTGTGTACGAGCTGCCATCGTTTGCCAAGAAGGGAAGAATGTACACGAAAGGTGAAGTGAGGAGCATT GGAGGAGGTCCTGATGGGATGGTAGTCACTGGAGATGCTGCTGGTCTTGTCACTGTTTGGAGACTAACACACCAAGTCAAAATGCAGCAGTAG
AA sequence Show only first row Show all	>Lus10032066 pacid=23161150 polypeptide=Lus10032066 locus=Lus10032066.g ID=Lus10032066.BGIv1.0 annot-version=v1.0 MVVNTDSSGRISVSGQNQRNSGIVCRYWKQARCDRNPCRFLHEDSPTASPATYSSQPRSNVYDRRSQSKPPSAPIGDHRRNSHAQKPKVVDEIGEDNGKS KETACREWISGNCFRGDECKFSHAWFRGDGLSMMGRLDGHGHSVVSGLCFPPGSDKLFSGSGDGVIQVWDCNSGKVLGTLNVGGKIGCLVIDGDLLYVGL PNMVKARDLRSGDECTLTGPTGQIYALAIGMGVIFAGAQDGIIYSWKTAANEQGNFMFQPAAALIGHTSAVVSLKNEGGRLFSGSMDGTIKVWDGSNFQC LETFKGHDEAVLSLLCFSEYLLSCSLDCKIKVWGRSNGEGRFELMHTHEEADGALALCGVDLNGKPMLLCSWNNDSVGVYELPSFAKKGRMYTKGEVRSI GGGPDGMVVTGDAAGLVTVWRLTHQVKMQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10032066 [exp]	0	1
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10007879 [exp]	9.1	0.8277
AT3G21310			Core-2/I-branching beta-1,6-N-...		Lus10009738 [exp]	10.6	0.8142
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	15.4	0.8134
AT1G72790			hydroxyproline-rich glycoprote...		Lus10008464 [exp]	20.0	0.7930
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	20.5	0.8054
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	22.8	0.7871
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009103 [exp]	28.7	0.7825
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	35.3	0.7872
AT3G16940	CAMTA		calmodulin binding;transcripti...		Lus10016873 [exp]	37.7	0.7732
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	41.7	0.7866

Compare expression of checked genes

Lus10032066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.