Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01780 1847 / 0 TPLATE ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014599 [exp] 2150 / 0 AT3G01780 1910 / 0.0 ARM repeat superfamily protein (.1) Lus10014611 [exp] 107 / 2e-27 AT3G01780 82 / 2e-19 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334300 [exp] 1909 / 0 AT3G01780 1859 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032067 pacid=23161252 polypeptide=Lus10032067 locus=Lus10032067.g ID=Lus10032067.BGIv1.0 annot-version=v1.0 ATGGACATACTCTTCGCTCAGATCCAAGCGGACCTTCGCTCCAACGATGCTCTCCGCCAGTCCGGCGCTCTACTCCAATCCCTCCAGCAGTCCGCTGCCG GCCGCGACGTCTCCGTCATTGCCAAGACCGCCGTCGACGAGATCGTCGCCGCTCCAGCCTCCGCCATCTGCAAGAAGCTTGCCTTCGACTTGATCCGATC CACTCGCCTCACTACCGATCTCTGGGACAATGTCCGTGCCGGAGTACGCAACGATCTCCACTTTCCTGACCCTGACGTCACCGCCGCCGCAATCTCCATC CTCGCTGCCATGCCTTCCTACTGTCTCTCCAAGGTGATCACTGATTGTAGCGCTGAAATCTCCAGTTGCTTTGATTCTCCCAGCGATAACCTGAGGTTCT CCATCACTGAGACGTTGGGATCCGTTCTTGCGAGGGACGATTTGGTGACCTTGTGTGAGAATAATGTCAACCTGCTGGAGAAGGTTTCTGGTTGGTGGTC GAGGATTGGGCAGAACATGCTGGATAAATCCGATTCCGTTGCCAAAGTTGCGTTTGAATCTATTGGGAGGTTGTTTCAGGAGTTCAATTCCAAACGGATG AGCAGGTTAGCTGGTGATAAGTTAGTGGATAGTGAGAATTCAGTAGCTATTAGGTCGAAATGGGTGTCTTCGATGGTGGATTTCGTCTGGAAGAGGAGAA ATGCGTTGATGTCTCGCTCATTGATCTTGCCTGTTGAGACCTTCAGGGCTACTGTTTTCCCTCTCGTGTACTCAGTGAAGGCAGTGGCATCTGGTAACGT GGAGGTGATTAGGAAGCTCTCTAAGGCCGCAGGTGGTGCCAATGGCACTGTGGTAGACTCCACTGCGGATAAGCTTGTTGGAGTTTCTGATGTGGTAACG CATTTGGCTCCTTTCTTGGGTTCTTCGTTGGATCCAGCACTGATCTTTGACGTGGGGATTAATATGTCATACTTGGCGGATGTGCCAGGAGGGAAGCCAG AGTGGGCGTCTCAGTCTATAATTGCAATCCTAACACTTTGGGACAGGCAAGAGTTCTCTTCAGCGAGGGAGAGTATTGTTAGAGCTGTTGTTACGAATCT ACACCTTCTTGATCTTCATATGCAGGTTTCATTGTTCAAAAGGCTGCTTGTTATGGTTAGAAATTTGAGGGCAGAATCAGATCGTATGCATGCCTTAGCA TGTATTTGTCGAACAGCTCTGTGTGTTGACCTTTTTGCAAAGGAGAGCGTCCGAAGAGGCCAAAAACCTCTTGTTGGAACTGATATTGCTTCTCTTTTCG AAGATGCAAGGATTAGAGATGATCTCAACAGCGTTACCAGTAAAAGTCTTTTCAGAGAAGAGCTGGTAGCTTCGTTGGTGGAAAGTTGCTTTCAGTTGTC TCTACCTTTACCTGAGCAAAAGAACTCAGGAATGGAAAGCCGAGTGATTGGTGCATTGGCTTATGGAACTGCATATGGGGCACTGAATTGGACAGAGCCA GCTCTAGAGGTTGTGGAAGTTTGTAGACCCTGTGTAAAGTGGGATTGTGATGGCAGGACATATGCAATTGATTGCTATCTGAAGTTGCTTGTTAGGTTGT GCCATATCTATGATACCAGGGGAGGTGTAAAAACTATAAAGGATGGTGCTTCTCAGGATCAGATCCTGAATGAGACTAGGTTGCAGAATCTTCAACGTCA TCTCGTGAAGGATCTTCGGGAGGTGCATACACAACGAGTATCTCCGCGTGTCATATGGGCTATTGCTGAGCATCTGAACTTAGATGGTTTGGATCCTCTT CTAGCAGATGATCCTGAAGATCCTTTAAACATGATAATATCAAACATCCACAAAATTTTGTTCAACATGGATTCATCTGCAAGCACAACAAATAGACTTC AAGATGTCCAGGCAGTTCTGTTAAGTGCTCAGCGGTTGGGATCTCGCAATGCTAGGGCTGGCCAGTTGCTGACCAAGGAGCTCGAGGAATTCAGAAGCAG TAATTTAGCTGATTCCGTGAGCAAGCATCAGTGCCGACTGATATTACAGAGAATTAAATATGTTCAAGCTCGTACTGAAAACAGGTGGGCTGCAGTCAAC GAGGCCAGAGGGGACTACCCATTTACGCACCACAAACTTACTGTTCAGTTTTATGAAGCAGCTGCAGCTCAGGATAGAAAGTTGGAAGGTCTAGTCCACA AGGCCATTTTGGAGCTCTGGAGGCCAGATCCAAGTGAATTAACAGTATTGGTTACAAAAGGAGTTGATTCTTCACTGCTCAAAGTTCAACCTCCTGCATA CACATTGTCCGGCAGTAGTGATCCATGCTATGTTGAAGCTTATCATTTGGCTGACTCTAGAGATGGAAGGATTACTCTACATCTTAAGGTTTTAAATTTG ACAGAACTTGAACTGAATCGGGTGGACATTCGAGTTGGCTTATCTGGCTCATTATATTTCATGGATGGATCTCCCCAAGCCGTACGACAGTTGCGCCATC TTGTTTCACAGGATCCAGTACTCTGCAGCGTGACAGTTGGGGTGTCCCATTTCGAAAGCTGTGCCCTCTGGGTTCAGGTCTTATACTACCCATTTTACGG TAGCGGTGCAGCTGGAGATTACAACGGTGACTACACTGAAGAAGATCCTCAGATTCTTCGACAGAAAAGGAGCTTAAGACCAGAATTAGGCGAGCCTGTG ATCTTGCGATGTCAGCCATTCAAAATCCCGCTAACTGAACTTCTATTGCCTTACAAGATTTCTCCAGTCGAGTTCTTCCGGTTGTGGCCTAGTTTACCTG CCGTAGTAGAGTGTACCGGTACTTATCTCTACGAAGGAAGCGGGTTCAAGGCAACTGCGGCTCAACAATATGGTTCTTCTCCATTCCTCAGTGGACTGAA ATCGTTGTCTTCCAAGCCATTTCACAGAGTTTGTTCCCACGTAATCCGGACAGTGGCAGGATTTCAGCTATGCTATGCTGCAAAGACTTGGTTCGGAGGC TTCATAGGGATGATGGTGTTTGGGGCCAGTGAAGTTAGCAGGAACGTGGATCTCGGGGATGAGACAACTACCATGATATGCAAGTTTGTTGTACGAGCAT CCGACGTATCGATCACCAAGGAAATTGAATCAGACTTGCAAGGATGGTTAGACGACCTTACCGAGGGCGGGGTGGAGTACATGCCGGAAGATGAAGTGAA GGAAGCAGCAGCAGAGAGACTGCGAATATCGATGGAGCGTATCGCATTACTAAAAGCTGCACAGCCTCAACCGAAAAGTCCCAAATCGGAGGTGGAGGAA GAAGAGGACGATGAGGAGGAGAAGAATGAAGGAAAAGAGAAGGAGAAGAAAGAAGAGAAGAAAGGGCCTCAGACGATGTCGAAACTAACAGCGGAGGAAG TTGAGCATATGGCGCTTCAGTCAGCCGTACTGCAAGAGTGGCACACGTTATGCAAGGAGAGAAGCATCAGAAGCTAG
AA sequence Show only first row Show all	>Lus10032067 pacid=23161252 polypeptide=Lus10032067 locus=Lus10032067.g ID=Lus10032067.BGIv1.0 annot-version=v1.0 MDILFAQIQADLRSNDALRQSGALLQSLQQSAAGRDVSVIAKTAVDEIVAAPASAICKKLAFDLIRSTRLTTDLWDNVRAGVRNDLHFPDPDVTAAAISI LAAMPSYCLSKVITDCSAEISSCFDSPSDNLRFSITETLGSVLARDDLVTLCENNVNLLEKVSGWWSRIGQNMLDKSDSVAKVAFESIGRLFQEFNSKRM SRLAGDKLVDSENSVAIRSKWVSSMVDFVWKRRNALMSRSLILPVETFRATVFPLVYSVKAVASGNVEVIRKLSKAAGGANGTVVDSTADKLVGVSDVVT HLAPFLGSSLDPALIFDVGINMSYLADVPGGKPEWASQSIIAILTLWDRQEFSSARESIVRAVVTNLHLLDLHMQVSLFKRLLVMVRNLRAESDRMHALA CICRTALCVDLFAKESVRRGQKPLVGTDIASLFEDARIRDDLNSVTSKSLFREELVASLVESCFQLSLPLPEQKNSGMESRVIGALAYGTAYGALNWTEP ALEVVEVCRPCVKWDCDGRTYAIDCYLKLLVRLCHIYDTRGGVKTIKDGASQDQILNETRLQNLQRHLVKDLREVHTQRVSPRVIWAIAEHLNLDGLDPL LADDPEDPLNMIISNIHKILFNMDSSASTTNRLQDVQAVLLSAQRLGSRNARAGQLLTKELEEFRSSNLADSVSKHQCRLILQRIKYVQARTENRWAAVN EARGDYPFTHHKLTVQFYEAAAAQDRKLEGLVHKAILELWRPDPSELTVLVTKGVDSSLLKVQPPAYTLSGSSDPCYVEAYHLADSRDGRITLHLKVLNL TELELNRVDIRVGLSGSLYFMDGSPQAVRQLRHLVSQDPVLCSVTVGVSHFESCALWVQVLYYPFYGSGAAGDYNGDYTEEDPQILRQKRSLRPELGEPV ILRCQPFKIPLTELLLPYKISPVEFFRLWPSLPAVVECTGTYLYEGSGFKATAAQQYGSSPFLSGLKSLSSKPFHRVCSHVIRTVAGFQLCYAAKTWFGG FIGMMVFGASEVSRNVDLGDETTTMICKFVVRASDVSITKEIESDLQGWLDDLTEGGVEYMPEDEVKEAAAERLRISMERIALLKAAQPQPKSPKSEVEE EEDDEEEKNEGKEKEKKEEKKGPQTMSKLTAEEVEHMALQSAVLQEWHTLCKERSIRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10032067 [exp]	0	1
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014599 [exp]	2.6	0.9010
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	5.5	0.8466
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10039684 [exp]	10.8	0.8675
AT4G24530			O-fucosyltransferase family pr...		Lus10015890 [exp]	10.9	0.8236
AT1G31780			unknown protein		Lus10035691 [exp]	12.5	0.8318
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10035450 [exp]	13.0	0.8423
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	13.3	0.8237
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	13.7	0.8515
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	14.7	0.8645
AT5G12370		SEC10	exocyst complex component sec1...		Lus10007908 [exp]	15.2	0.8490

Compare expression of checked genes

Lus10032067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.