Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014600 [exp] 628 / 0 ND / Lus10010972 [exp] 141 / 2e-37 ND / Lus10031351 [exp] 140 / 5e-37 ND / Lus10032091 [exp] 46 / 7e-05 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318600 [exp] 342 / 6e-114 ND / Potri.017G058200 [exp] 338 / 2e-112 ND / Potri.004G088000 [exp] 147 / 9e-40 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032068 pacid=23161271 polypeptide=Lus10032068 locus=Lus10032068.g ID=Lus10032068.BGIv1.0 annot-version=v1.0 ATGCCGTCCAAGAGAAAGAAATGGACGGAAGCAGAAGAGAAAACCCTAATTGCTAAGTACGGCGAGATGGTATCGGAAGGGACTTTTGCCAAGATGAAGA CACGGGAGAAGAAGTTCAAGCCGATTGCTCTGTATGTCAACTCGATGCACCATGCACGCGATCCGATTGCTTATCCTTGGCAGTGGACGTGGAAAGACGT GTCCACTAAGGTCCAGAACATGAGGCATCAGTATTCGTTGGTTAAGCAGAAGGTGAAGAAACCCAATTTCTCCGCAGAAGATGACGGGCCCGAAGGTGGT GGTGGGGGAGATTGTGCCATTGGAGATGAGTTTGACTGGGTGGAAGGGCTTACTCACTGGTCCAACTTCCTGCTCTACAAGGAAGTATTTGGGGATTTGC CGATTTCGTATGGTGGTAATGGGAATGACTTGATGGGAGTGTTGAATGAGGATCGGGAGAATGGAGGATTGTTGGTGGGTAGGACGGGGTTGGACATTGT TGAGTTTGGTCATTTAGGTAATTCAGCTAATGGAGATTTCGGTGTGATCGATGGAAGCGAGAATGGAGTGCTGGGTTTGGGGTTTGATTATGAAGGAGAA GAAGCAGATGAACATTTCAATGGCAATGGTCGCATGAGGGAGGATGTTGATGAAGGTTTCATGAATGAAGAAGTGGCAGCTCCCGTGCCTATTAGTACGA GGAAGAGGAGGAGGAAGAAGAAAGAGTTGAAGGGATTGGAGAAGAGGTTGTTCAGTTTCCTTTCAACTCAAGTGGGGCAATTGCGAGAAATGGAGTCTCG GTTTGAGCAACGGGAGGTGGAGAGGGACCGGGAGAGACAGAGGAGGGAGATTGTACAAATGGAGAGGGAACAGGAACTGCAAAGGAAGTTGGAAGAGAGG GAGAAAGAGAGGGAAGAGAGGGATAACTTGAGAAGACAAAGAATTCGGGAGTGGGAAGCCATGGAGAAAGAGAGTGAAGAGAGGGAAAGAAGAAGAAGAG ATGAGGAGTTACTTGAAGAGAGGGAATGGGAGGAAAGGATGAATAGGCGGAGGTTGGAATGGAAGAAGAGGATTGATGGGATGTTAAACCAGCACCGAGA AGAGATCGGGCAGGTTCAAACCCGCATTCTTCATGAGCAGCAAAACCTCACAAGCCAGTTATTGGGGATTGTTTCACAGTGGGCTGGCCATCCAGCTGGT CTCTCCGATCACACGAGTGCTAGCAACCATTACATCTCCCAGATGATGCAGAATCTGCACCATGTGAACGGTATGGTTCATGGAGACACCAGAGTGGATG GAGATGCTCAAGATGACCAATTCATTGTGGATGGATAA
AA sequence Show only first row Show all	>Lus10032068 pacid=23161271 polypeptide=Lus10032068 locus=Lus10032068.g ID=Lus10032068.BGIv1.0 annot-version=v1.0 MPSKRKKWTEAEEKTLIAKYGEMVSEGTFAKMKTREKKFKPIALYVNSMHHARDPIAYPWQWTWKDVSTKVQNMRHQYSLVKQKVKKPNFSAEDDGPEGG GGGDCAIGDEFDWVEGLTHWSNFLLYKEVFGDLPISYGGNGNDLMGVLNEDRENGGLLVGRTGLDIVEFGHLGNSANGDFGVIDGSENGVLGLGFDYEGE EADEHFNGNGRMREDVDEGFMNEEVAAPVPISTRKRRRKKKELKGLEKRLFSFLSTQVGQLREMESRFEQREVERDRERQRREIVQMEREQELQRKLEER EKEREERDNLRRQRIREWEAMEKESEERERRRRDEELLEEREWEERMNRRRLEWKKRIDGMLNQHREEIGQVQTRILHEQQNLTSQLLGIVSQWAGHPAG LSDHTSASNHYISQMMQNLHHVNGMVHGDTRVDGDAQDDQFIVDG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032068 [exp]	0	1
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	2.0	0.8903
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10006432 [exp]	2.4	0.8720
					Lus10017659 [exp]	4.0	0.8149
AT3G05670			RING/U-box protein (.1)		Lus10031468 [exp]	4.2	0.8341
					Lus10014600 [exp]	6.3	0.8327
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	6.3	0.8551
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001751 [exp]	6.6	0.8015
AT1G71780			unknown protein		Lus10016547 [exp]	6.9	0.8595
					Lus10010972 [exp]	8.7	0.8532
AT3G27250			unknown protein		Lus10032077 [exp]	10.7	0.8408

Compare expression of checked genes

Lus10032068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.