Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04970 195 / 6e-58 ATGSL01, ATGSL1 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) AT4G03550 188 / 2e-55 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) AT1G05570 114 / 2e-29 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT5G13000 113 / 4e-29 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G31960 112 / 9e-29 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT5G36870 110 / 4e-28 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT2G13680 105 / 3e-26 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT3G14570 96 / 3e-23 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G59100 92 / 1e-21 ATGSL11 glucan synthase-like 11 (.1) AT2G36850 91 / 1e-21 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033689 [exp] 190 / 5e-56 AT4G03550 2828 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10031648 [exp] 186 / 1e-54 AT4G03550 2827 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10039828 [exp] 179 / 5e-52 AT4G03550 2762 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10014601 [exp] 173 / 7e-51 AT4G04970 635 / 0.0 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) Lus10030030 [exp] 150 / 5e-42 AT4G03550 2251 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10000266 [exp] 148 / 2e-41 AT4G03550 2613 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10037469 [exp] 117 / 2e-30 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10003920 [exp] 117 / 2e-30 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 108 / 1e-27 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052400 [exp] 226 / 1e-68 AT4G04970 2583 / 0.0 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) Potri.013G131300 [exp] 181 / 5e-53 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Potri.001G230000 [exp] 114 / 1e-29 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G012200 [exp] 114 / 2e-29 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 112 / 6e-29 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 108 / 2e-27 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.011G095100 [exp] 99 / 2e-24 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.015G089300 [exp] 96 / 3e-23 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.002G058700 [exp] 95 / 9e-23 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.005G203500 [exp] 94 / 1e-22 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032069 pacid=23161059 polypeptide=Lus10032069 locus=Lus10032069.g ID=Lus10032069.BGIv1.0 annot-version=v1.0 ATGGCCTCGAACTTCCCAGGACCTCCACAGCCCACGCGCGGCCCCTACCCACCGCACGCGCCGATGAATCACCACCAACCAGAAATCTACAACATAATCC CTATCCACGACCTACTAACAGACCATCCCTCCCTCCGCTACCCGGAGGTCAGAGCCGCAGCCTCCCTGGTATTGCACTTAGCCAATTCCCAAATGCGCCT CCAGCCGCCGCCGGTGCTTCCCGACGCCCTGGACCCCACCGTCCTCCGTCGCTTCCGCCGAAAGCTGCTCGCCAACTACACCTCCTGGTGCTCCTACATC GGGAGGAGGTCGCAGCTGGTTTTCGCCGGTAGACCTAGCAGCGACGATCAAATCAGGAGGGAGTTGCTCTACGTCGGACTATACCTTCTAATTTGGGGAG AATCTGGTAATGTTAGGTTTATGCCTGAGTGTATCTGTTACATTTATCACCATATGGCGATGGAGCTGAACCAATTCCTGGACGAATGGACTGATCCTGA AACCGGTAGAGCCTTTCTCCCTTCCTTCTCACCTCCCTTCCTTCTCCGGTGA
AA sequence Show only first row Show all	>Lus10032069 pacid=23161059 polypeptide=Lus10032069 locus=Lus10032069.g ID=Lus10032069.BGIv1.0 annot-version=v1.0 MASNFPGPPQPTRGPYPPHAPMNHHQPEIYNIIPIHDLLTDHPSLRYPEVRAAASLVLHLANSQMRLQPPPVLPDALDPTVLRRFRRKLLANYTSWCSYI GRRSQLVFAGRPSSDDQIRRELLYVGLYLLIWGESGNVRFMPECICYIYHHMAMELNQFLDEWTDPETGRAFLPSFSPPFLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10032069 [exp]	0	1
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10038534 [exp]	6.3	0.8973
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	7.3	0.9091
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10020011 [exp]	7.7	0.8769
AT5G04610			S-adenosyl-L-methionine-depend...		Lus10023784 [exp]	13.4	0.8283
					Lus10020187 [exp]	14.3	0.8233
AT1G04210			Leucine-rich repeat protein ki...		Lus10021899 [exp]	14.5	0.8968
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019616 [exp]	16.2	0.8922
AT1G43770			RING/FYVE/PHD zinc finger supe...		Lus10028603 [exp]	16.7	0.8594
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	19.0	0.9008
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	19.1	0.8993

Compare expression of checked genes

Lus10032069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.