Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27220 508 / 5e-180 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G51540 498 / 3e-176 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 42 / 0.0005 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014602 [exp] 759 / 0 AT3G27220 555 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10034826 [exp] 514 / 0 AT1G51540 644 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10033376 [exp] 510 / 0 AT1G51540 644 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006200 [exp] 516 / 0 AT1G51540 662 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G252100 [exp] 511 / 0 AT1G51540 637 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G334800 [exp] 303 / 4e-101 AT3G27220 0 / 1 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 54 / 1e-07 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 47 / 3e-05 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 45 / 9e-05 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G037400 [exp] 43 / 0.0003 AT1G16250 93 / 7e-21 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032070 pacid=23161200 polypeptide=Lus10032070 locus=Lus10032070.g ID=Lus10032070.BGIv1.0 annot-version=v1.0 ATGGCGCCTCCTCTAATTCAATCTCGAAAACAGCAGCACCACCATGGCGTAGTATCAGCTACCAAGCTGGGTTTCATTTTGGTCTCTGTTTGCCTCTTGG GAGGAGCTGCTTTTCTTGTTGATTTCTTCTGGCTATCATCATCATCCTCTTCTTCCATTCCTCTCATTGCTTTCAACAACAATTCCAAGGTCGGTGGAGT GGTTAGGATTGAAACCAACAAGAATGAGACATCACTATCAGCAACATTTGCTGATCTACCAGCTTTTGAGTTGGATTGGGAACAGATGCCTTCAGCTCCA GTGCCTCGTCTGGATGGTTACTCGGTTCAAATAGGTCATCTTCTCTACGTTTTTGTAGGATATCGAAATCTCGACAATGTAAATTCTCATGTTGATGTGT TCAATATGAGTGAGAACAAATGGTCAGATAGGTTCGATACGCCTAAGGAGATGGCGAATTCGCACTTGGGAGTGGCGACCGATAGCAGTAGATTCGTGTA CATTGTCTCGGGACAGAAAGGTCCTCAGTGCAGAACGGCTATAACTCTTTGTTACTCTCTTGACACATTGACTAAGCAATGGTTCAGCTTGCCGCTATTG CCTCATCCTAGGTATGCTCCTGCTACACAGCTGTGGAGAGGGAGGCTTCATGTGATGGGCGGAAGCAAGGAGAATCGACATACTCCCGGATTAGAACACT GGAGTATTGCTGTAAAAGACGGCAGAGCTTTAGAGAAGGAATGGCGGAGCGAAGTACCAATTCCTCGTGGCGGACCACACAGGGCTTGTATTGTGGCAAA TGATAAGTTGTTTGTAATTGGTGGCCAAGAGGGTGATTTCATGCCCAAACCAAACTCCCCTATTTTCAAATGCTCCCGAAGAAAAGAGGTGGTTTATGGC GATGTATACATGCTGGATAGTTCGATGAAGTGGAAAACTCTGGCACCAATGCCCAAACCAGACTCTCATATAGAATGCGCGTGGGTAGTCGTAAACAACT CGATTGTTATCGTCGGAGGTACAACGGAGAAGCATCCTCAGACCAAGAGGATGATGTTGGTTGGGGAGATCTTTCAGTTTCATCTCGACTCACTGAGTTG GTCAGTAATCGGAAAGCCCCTTTACCGGGTAAAGACGACGCTTGCTGGCTTCTGGGAAGGATGGCTATACTTTACATCTGGGCAGAGAGACAGAGGACCT GGTAATCCCCAACCCCAAAAGGTCATAGCAGAAACTTGGAGAACTAAACTGAAGCTGACGTGA
AA sequence Show only first row Show all	>Lus10032070 pacid=23161200 polypeptide=Lus10032070 locus=Lus10032070.g ID=Lus10032070.BGIv1.0 annot-version=v1.0 MAPPLIQSRKQQHHHGVVSATKLGFILVSVCLLGGAAFLVDFFWLSSSSSSSIPLIAFNNNSKVGGVVRIETNKNETSLSATFADLPAFELDWEQMPSAP VPRLDGYSVQIGHLLYVFVGYRNLDNVNSHVDVFNMSENKWSDRFDTPKEMANSHLGVATDSSRFVYIVSGQKGPQCRTAITLCYSLDTLTKQWFSLPLL PHPRYAPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGRALEKEWRSEVPIPRGGPHRACIVANDKLFVIGGQEGDFMPKPNSPIFKCSRRKEVVYG DVYMLDSSMKWKTLAPMPKPDSHIECAWVVVNNSIVIVGGTTEKHPQTKRMMLVGEIFQFHLDSLSWSVIGKPLYRVKTTLAGFWEGWLYFTSGQRDRGP GNPQPQKVIAETWRTKLKLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27220			Galactose oxidase/kelch repeat...		Lus10032070 [exp]	0	1
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10008564 [exp]	2.0	0.9326
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	3.0	0.9450
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	3.7	0.9080
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	7.3	0.9303
AT4G32060			calcium-binding EF hand family...		Lus10041027 [exp]	10.8	0.9018
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	11.8	0.9171
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	13.3	0.9178
AT5G59790			Domain of unknown function (DU...		Lus10005887 [exp]	18.5	0.9029
AT5G26200			Mitochondrial substrate carrie...		Lus10026468 [exp]	19.4	0.8751
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10017045 [exp]	22.0	0.9081

Compare expression of checked genes

Lus10032070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.