Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04120 600 / 0 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G13440 599 / 0 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) AT1G79530 479 / 8e-170 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G16300 478 / 9e-170 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT1G42970 271 / 4e-88 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 246 / 2e-79 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 243 / 1e-77 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014603 [exp] 657 / 0 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10022332 [exp] 637 / 0 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Lus10006435 [exp] 566 / 0 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10011375 [exp] 566 / 0 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10015826 [exp] 564 / 0 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10036976 [exp] 545 / 0 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10009602 [exp] 481 / 1e-170 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10000872 [exp] 479 / 7e-170 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10016033 [exp] 254 / 1e-81 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335800 [exp] 597 / 0 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.015G091400 [exp] 589 / 0 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.012G094100 [exp] 588 / 0 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.010G055400 [exp] 582 / 0 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.008G179300 [exp] 565 / 0 AT3G04120 573 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.008G083900 [exp] 479 / 4e-170 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.010G172400 [exp] 478 / 1e-169 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.005G254100 [exp] 257 / 2e-82 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G007100 [exp] 256 / 2e-82 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G220566 [exp] 238 / 2e-75 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00044 [flax] [poplar] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02800 [flax] [poplar] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032071 pacid=23161096 polypeptide=Lus10032071 locus=Lus10032071.g ID=Lus10032071.BGIv1.0 annot-version=v1.0 ATGGCCAAGGTCAAGATCGGAATCAACGGTTTCGGAAGGATCGGACGTTTGGTAGCTAGAGTCGCATTGCAGAGAGACGATGTCGAGCTCGTCGCCGTCA ACGATCCTTTCATCACCACTGATTACATGACTTATATGTTCAAGTACGACAGTGTTCATGGACAATGGAAGCACAATGAACTCAAAGTCAAGGATTCCAA AACCCTTCTCTTTGGCGACAAGCCCGTCACTGTTTTCGGCTGCAGAAATCCGGAGGAAATCCCATGGGGGGAGACCGGAGCTGAGTACATTGTCGAATCC ACCGGTGTTTTCACTGATAAGGACAAAGCTGCTGCTCATTTGAAGGGTGGTGCTAAGAAGGTTGTTATCTCTGCACCTAGCAAAGATGCTCCAATGTTTG TTGTTGGTGTGAATGAGAAGGAATACAAGTCTGACCTTGATGTTGTCTCAAACGCTAGCTGCACCACCAACTGTCTTGCTCCTTTAGCTAAGGTCATCAA TGACAAATTTGGCATTGTTGAGGGTCTTATGACCACTGTACACTCCATTACAGCCACTCAAAAGACCGTCGATGGCCCATCGATGAAGGACTGGAGAGGT GGACGAGCTGCATCCTTCAATATCATCCCAAGCAGCACCGGAGCTGCTAAGGCTGTTGGGAAAGTTTTGCCTGCACTGAATGGGAAGTTGACCGGAATGG CCTTCCGTGTTCCCACGGTTGATGTATCAGTGGTTGACCTCACCGTCAGACTTGAGAAGAGCGCCACTTATGATGAAATCAAGAAGGCCATCAAGGAAGC ATCTGAGAGTTCCATGAAGGGAATCCTTGGTTACACCGAGGATGATGTCGTCTCCACCGACTTCGTTGGATGTAACAGGTCTAGCATCTTCGATGCCAAG GCTGGAATCGCTCTGAACGACAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAATGGGGCTACAGCACAAGGGTTGTTGACTTGATCTGCCACATGG CTTCCTGCAAATAA
AA sequence Show only first row Show all	>Lus10032071 pacid=23161096 polypeptide=Lus10032071 locus=Lus10032071.g ID=Lus10032071.BGIv1.0 annot-version=v1.0 MAKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHNELKVKDSKTLLFGDKPVTVFGCRNPEEIPWGETGAEYIVES TGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKSDLDVVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRG GRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKSATYDEIKKAIKEASESSMKGILGYTEDDVVSTDFVGCNRSSIFDAK AGIALNDNFVKLVSWYDNEWGYSTRVVDLICHMASCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10032071 [exp]	0	1
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10010219 [exp]	1.0	0.8301
AT5G08580			Calcium-binding EF hand family...		Lus10010165 [exp]	3.5	0.7707
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10022297 [exp]	4.5	0.7037
AT1G23200			Plant invertase/pectin methyle...		Lus10009110 [exp]	7.3	0.7839
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	8.2	0.7946
AT1G12040		LRX1	leucine-rich repeat/extensin 1...		Lus10040566 [exp]	8.9	0.7632
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007119 [exp]	12.4	0.7352
					Lus10029619 [exp]	14.1	0.7296
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027431 [exp]	16.1	0.7283
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10035719 [exp]	18.3	0.6759

Compare expression of checked genes

Lus10032071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.