Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40770 457 / 2e-164 ATPHB3 prohibitin 3 (.1) AT3G27280 444 / 2e-159 ATPHB4 prohibitin 4 (.1.2) AT5G14300 303 / 7e-104 ATPHB5 prohibitin 5 (.1) AT1G03860 242 / 2e-79 ATPHB2 prohibitin 2 (.1.2.3) AT4G28510 239 / 3e-78 ATPHB1 prohibitin 1 (.1) AT5G44140 234 / 2e-76 ATPHB7 prohibitin 7 (.1) AT2G20530 233 / 6e-76 ATPHB6 prohibitin 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014604 [exp] 530 / 0 AT5G40770 482 / 2e-174 prohibitin 3 (.1) Lus10034395 [exp] 244 / 2e-80 AT1G03860 429 / 3e-153 prohibitin 2 (.1.2.3) Lus10019161 [exp] 243 / 5e-80 AT4G28510 434 / 4e-155 prohibitin 1 (.1) Lus10021978 [exp] 241 / 3e-79 AT1G03860 436 / 9e-156 prohibitin 2 (.1.2.3) Lus10042515 [exp] 241 / 4e-79 AT1G03860 433 / 9e-155 prohibitin 2 (.1.2.3) Lus10035521 [exp] 199 / 7e-63 AT5G40770 221 / 1e-71 prohibitin 3 (.1) Lus10027776 [exp] 154 / 3e-46 AT5G40770 173 / 9e-54 prohibitin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335700 [exp] 460 / 1e-165 AT5G40770 429 / 3e-153 prohibitin 3 (.1) Potri.017G065800 [exp] 457 / 1e-164 AT5G40770 433 / 7e-155 prohibitin 3 (.1) Potri.007G134700 [exp] 242 / 2e-79 AT4G28510 463 / 2e-166 prohibitin 1 (.1) Potri.017G017400 [exp] 234 / 2e-76 AT4G28510 457 / 5e-164 prohibitin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10032072 pacid=23161167 polypeptide=Lus10032072 locus=Lus10032072.g ID=Lus10032072.BGIv1.0 annot-version=v1.0 ATGGCTAACCAAGTTGCCATCATGAACTTCTTGAAGTCCATCGCCAAGTCGGCCTTCGGCCTCGGAGCTGCCGTGTCGGTCGTTAGCGCCTCGCTCTACA CCGTCGATGGAGGCGAGAGGGCTGTGATTTTCGACCGGTTCCAAGGAGTTCTCCCCAACACCGTCGGCGAAGGAACTCATTTCAGGATTCCGTGGCTCCA GACGCCTAATGTCTTCGATATCCGAACCAAGCCGCACACCTTCTCCTCCGTCTCTGGTACTAAGGATCTGCAGATGGTGAATCTCACTCTCCGTGTCCTC TCTCGCCCGGAGGTAACACGTTTGCCTTACATCTACCAACATCTTGGGCTGGAGTATGATGAGAAGGTCCTCCCATCGATCGGCAATGAGGTGTTGAAGG CTGTTGTGGCTCAATTCAATGCTGATCAGCTACTGACTGAGCGTCCTCGTGTCTCTGCCCTCGTCAGGGAGTCTCTTATCAACCGTGCTAGGGACTTTAA CATTGTGCTCGATGATGTGGCAATCACCCACTTGTCCTATGGTGTTGAGTTCTCTAGGGCCGTCGAGCAGAAGCAGGTGGCTCAGCAGGAGGCTGAGAGG TCCAAATTTGTTGTCATGAAAGCTGACCAAGAGAGGAGGGCTGCTGTTATCAGGGCTGAGGGTGAAAGTGAGGCTGCCAAGCTGATCTCTGACGCCACCA CAAAGGCTGGAATGGGGCTTATTGAGCTTAGGAGGATCGAGGCTTCTAGGGAAATTGCTGGAACTCTTGCTAAGTCACCCAATGTGGCGTACCTTCCCGG TGGCAACAACATGCTCCTTGCATTGAACGCTGGCCGTTGA
AA sequence Show only first row Show all	>Lus10032072 pacid=23161167 polypeptide=Lus10032072 locus=Lus10032072.g ID=Lus10032072.BGIv1.0 annot-version=v1.0 MANQVAIMNFLKSIAKSAFGLGAAVSVVSASLYTVDGGERAVIFDRFQGVLPNTVGEGTHFRIPWLQTPNVFDIRTKPHTFSSVSGTKDLQMVNLTLRVL SRPEVTRLPYIYQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPRVSALVRESLINRARDFNIVLDDVAITHLSYGVEFSRAVEQKQVAQQEAER SKFVVMKADQERRAAVIRAEGESEAAKLISDATTKAGMGLIELRRIEASREIAGTLAKSPNVAYLPGGNNMLLALNAGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10032072 [exp]	0	1
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10014604 [exp]	1.0	0.9555
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10024956 [exp]	4.6	0.8911
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	4.7	0.9310
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10010430 [exp]	5.5	0.9161
AT5G09500			Ribosomal protein S19 family p...		Lus10024865 [exp]	5.5	0.9211
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	7.3	0.9131
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10017852 [exp]	8.9	0.9046
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	9.5	0.9020
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	11.8	0.9162
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	14.4	0.8974

Compare expression of checked genes

Lus10032072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.