Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14280 177 / 1e-52 GeBP DNA-binding storekeeper protein-related (.1) AT3G27270 145 / 2e-43 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT3G25950 134 / 5e-39 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014607 [exp] 249 / 9e-84 AT5G14280 311 / 3e-103 DNA-binding storekeeper protein-related (.1) Lus10036981 [exp] 131 / 1e-37 AT5G14280 243 / 9e-81 DNA-binding storekeeper protein-related (.1) Lus10015821 [exp] 88 / 3e-20 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335100 [exp] 177 / 5e-56 AT5G14280 333 / 6e-112 DNA-binding storekeeper protein-related (.1) Potri.008G178800 [exp] 132 / 2e-38 AT3G25950 266 / 3e-90 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) Potri.010G056000 [exp] 0 / 1 AT5G14280 72 / 6e-16 DNA-binding storekeeper protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10032075 pacid=23161159 polypeptide=Lus10032075 locus=Lus10032075.g ID=Lus10032075.BGIv1.0 annot-version=v1.0 ATGCAGCAGCTACTCCATACCCTAATCTCCCCCTTCACCACCGCCACCACCGCCGCCTCCCCCGCCGTCCTTCCTCTCTTCTTCACCTTCTTCCTCCTCA CATACCTCTTCGCTTACAACATCCTCTTCCGCCACTGGACTCCTTCAACCCGCCCCGCAGACTCCAGCTGCCTTATCTCCCTCTTCCATGGCACTCCCGC TGTTTTCCTCGCTTCCTTCTCCCTCTTCTCCCACCCTTCCACCTTCTCATCGCTCAACACTCCTCCCCAATCCGCCGTCCTTGATTTCAGCATAGCCTAC TTCCTCGTCGATCTCCTCCATTACCTCGTCTTCTGCCCTGGCGAAGTCCTCTTCATCGGACACCATTTGGCCACTCTCTTCGTCTTCCTCACCTGCCGCT ACCTCGTCGGACACGGTGCCTTCTCGATTCTCTCGCTGTTGATCCTTGCTGAGGTCACCAGCTTCTGCCAGAACGTTTGGACGCTCGCAGGTATGGTGTG GTTGGGGCCATCTCTGTTAGTATACTGTGGGTTGCCAATTTGTGGGTTGAGTTGCACAGAGAAAGGAAGGGTAGTTTGGAAAAGAAACACAGATAGAAGA AGATGA
AA sequence Show only first row Show all	>Lus10032075 pacid=23161159 polypeptide=Lus10032075 locus=Lus10032075.g ID=Lus10032075.BGIv1.0 annot-version=v1.0 MQQLLHTLISPFTTATTAASPAVLPLFFTFFLLTYLFAYNILFRHWTPSTRPADSSCLISLFHGTPAVFLASFSLFSHPSTFSSLNTPPQSAVLDFSIAY FLVDLLHYLVFCPGEVLFIGHHLATLFVFLTCRYLVGHGAFSILSLLILAEVTSFCQNVWTLAGMVWLGPSLLVYCGLPICGLSCTEKGRVVWKRNTDRR R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10032075 [exp]	0	1
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10014607 [exp]	2.8	0.8626
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	3.5	0.8955
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	3.5	0.8894
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10040887 [exp]	7.9	0.8586
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10042268 [exp]	8.9	0.8383
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032481 [exp]	12.2	0.8684
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10032504 [exp]	13.3	0.8695
AT5G67020			unknown protein		Lus10019344 [exp]	13.4	0.8857
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10017571 [exp]	14.1	0.8678
					Lus10010972 [exp]	14.4	0.8474

Compare expression of checked genes

Lus10032075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.