Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27260 305 / 9e-92 GTE8 global transcription factor group E8 (.1.2) AT5G14270 287 / 3e-86 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G01770 264 / 3e-78 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G63320 255 / 5e-72 NPX1 nuclear protein X1 (.1.2.3) AT1G73150 142 / 4e-36 GTE3 global transcription factor group E3 (.1) AT1G17790 142 / 6e-36 DNA-binding bromodomain-containing protein (.1) AT1G06230 141 / 2e-34 GTE4 global transcription factor group E4 (.1.2.3) AT5G65630 127 / 2e-30 GTE7 global transcription factor group E7 (.1) AT5G10550 126 / 7e-30 GTE2 global transcription factor group E2 (.1) AT5G46550 120 / 1e-28 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014609 [exp] 1106 / 0 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10033623 [exp] 136 / 7e-33 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 136 / 9e-33 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 136 / 9e-33 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10011989 [exp] 130 / 2e-31 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10007096 [exp] 130 / 3e-31 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10002784 [exp] 127 / 2e-30 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1) Lus10020470 [exp] 122 / 3e-30 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10039630 [exp] 125 / 8e-30 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335000 [exp] 407 / 4e-131 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.015G091800 [exp] 359 / 3e-112 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.012G094300 [exp] 345 / 6e-107 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.011G096400 [exp] 146 / 3e-37 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.011G077100 [exp] 142 / 2e-35 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1) Potri.001G355300 [exp] 139 / 3e-34 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.019G090700 [exp] 139 / 4e-34 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 137 / 2e-33 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 133 / 3e-33 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.001G285700 [exp] 131 / 6e-32 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10032076 pacid=23161199 polypeptide=Lus10032076 locus=Lus10032076.g ID=Lus10032076.BGIv1.0 annot-version=v1.0 ATGGTGAAGAGTGATACTTTCCGTGGAGCTTACTACCGAAGCTCACTAAGTGCAGCTGGTGAATTTGAGGGATCAGCAAGTTCTGGACAAATTGACATGG AGAATTATAATGCTCCAGCAAGGAAATTCGTGAACTTGAATTCTAATAAACGAGAGACATTTGGGGTACCTACACAGGTGTTTGCTTCTGCCAAAATGTC TTCATCTGAAAGAAAGGATCTTGCTCTAAAGTTGAGATCTGAGCTTGAACAGATCCGTATCTTTCAGAAGAAAGTTGTGGACAGGGGAGGCGGTGTTGCT CATTCTTCTAATCACATTCTCAATGGTACTAGTAAACCGAATGGGGCGCCAATGGGAAGTCATAAGAAATCCTCAGTTCTTACTTCTGGTCATGGTAATA AAGGAAGTGCTGTGCGAAAACTGAAGCCACAACCTGTGAGGGAACCAACAACATCAAATTCGGGAAATGCACTCTTGATGAAACAGTGTGGATCTTTGTT GGGTCGTTTGATGTCTCATCAATATGCTTATATCTTCAATTCACCAGTTGATGTCGAGATGCTAAACATCCCTGATTACTTCACTATTATTAAGCGTCCG ATGGATTTAGGAACTATAAAGAGCAATATAGTGAAAGGATTGTACTCAAGCCCATTGGAGTTTGCGGAAGATGTCAGGCTGACCTTCAGTAATGCTATGC TGTACAATCCTAAGACCAATGATGTCCATAAAATGGCTCAGACCCTTAGCAAAGATTTTGAAACGAGATGGAAACTTATAGAGAAGAAATTGCCGAAGAC TGAGCCCAAATATCAGCCAGAAAAGCCATATCAGCCAGAAAAAACATACCAGCCAGAAAAGCCATATCAGTCAGAAAAGCCATATCAGTCAGAAACGCCA TGTCAGTCCGATAAGCCAGTTCGTCACGACCATTTCAATGCTGTTGAAGCACCATCTTCTAAAAAAAGAAAAACAAGCTCATCCAAGCATGAAGGTACTG TAGAACCTTTAAAGCGGGTGATGACCAGTGACGAGAAGTACAAGTTGAGTGCGGAGCTTGAGGCTTTGTTGCCTGAAATGCCTGTGCACATAATTGATTT CTTGAAAGAGAATAGTTCTGGTGGACAAGATGCTGGTCAAGATGAAATCGAGATAGACATTGATGATCTCAGTGATGATACATTATTCACTCTGAGGAAA CTCTTGGATGATCACGCCAAAAAGAAGCAGGAGAATCTAGCTAGAGGGGAGCCTTGTGAAATAGAGCTGTTGAATGAATCCGCACCAACCAACTCACCAA TGCAGCGGCATATAGATGACGACCCAGTTGATGAAGATGTTGATATTGGTGGCGACGAGCCACCTGGCCTAAGCTATCCACCTGTGGAGATAGAAAGTGA CTTAGGCCCCGAGAGTTCTGAAATTGAATACGATCATGTGAAACCTTCAAGTCAATTACCTGCATCCAAGGTTCCTGAGGAATTTGGAGCTGGGGGTGAA CAGGATGATAAGATTATTGGTGATCACTTCACGGACAAAAACCAATCTATTAGTGGGTTGGATCAGCTGGAAGAAAATTCCCGTTGTAGACCCGGGTCAG ATGAGTCAGAGAGTCGACAAGATGGAGAAAGTTCGCCACATGAGAGGCAGGCTTCTCCTCTTAAAAATGACAGGGCTACTATGGTGAGAAAACGTTTCTC TGGTATGATATGGAAGGCTAAAGAAGAGAAGATACTCTTGCAGGGTGACAAAGTGGATCCAGACAAGCTGCGGCAAGAAAGAGAGAAACTAGAGTTGCAG AAAAAGAAAGGTGGCTTTTGCTTTCCGTCTGGTGGTTATTTACTACCTAGGTCAGTGGCGAAAAATTTATGGGGTTACATAAGAACTGTTTGTTTTCCAG AGATAGCAAGGTTAGAAGCAGAAGTTAAGGCCGCGGAAGATGCTCGTAAGAGGGCTGAGGCAGCTGCAGCCGAGGAGGCCAGGCGGCAACGGGAGGTTGA AAGAGAAGCTGCGAGGCAGGCACTGCTCAAGATTGAGAGGACAGTTGAAATTAATGAGAACTCCAAATGCCTGGAAGACCTGGAGATGCTTAGAAATGCA CCCCCTGCTGAGCAGTTACCAAGCTCTGGGGAGGAATCAAGCCCAGATCACCTCCAGGATGATGCGTTGGGTGGTTTCAAATTTGATGGGGATAGCAATC CCCTGGAACGACTTGGTTTGTTTATGAAAGACGACGAAGAGGAGGAAGAAGGCTGCGAGCCGATAAACAGCATTGCTGAAAACAAAACAGACGATGTAGA GGAGGGTGAAATCGATTAG
AA sequence Show only first row Show all	>Lus10032076 pacid=23161199 polypeptide=Lus10032076 locus=Lus10032076.g ID=Lus10032076.BGIv1.0 annot-version=v1.0 MVKSDTFRGAYYRSSLSAAGEFEGSASSGQIDMENYNAPARKFVNLNSNKRETFGVPTQVFASAKMSSSERKDLALKLRSELEQIRIFQKKVVDRGGGVA HSSNHILNGTSKPNGAPMGSHKKSSVLTSGHGNKGSAVRKLKPQPVREPTTSNSGNALLMKQCGSLLGRLMSHQYAYIFNSPVDVEMLNIPDYFTIIKRP MDLGTIKSNIVKGLYSSPLEFAEDVRLTFSNAMLYNPKTNDVHKMAQTLSKDFETRWKLIEKKLPKTEPKYQPEKPYQPEKTYQPEKPYQSEKPYQSETP CQSDKPVRHDHFNAVEAPSSKKRKTSSSKHEGTVEPLKRVMTSDEKYKLSAELEALLPEMPVHIIDFLKENSSGGQDAGQDEIEIDIDDLSDDTLFTLRK LLDDHAKKKQENLARGEPCEIELLNESAPTNSPMQRHIDDDPVDEDVDIGGDEPPGLSYPPVEIESDLGPESSEIEYDHVKPSSQLPASKVPEEFGAGGE QDDKIIGDHFTDKNQSISGLDQLEENSRCRPGSDESESRQDGESSPHERQASPLKNDRATMVRKRFSGMIWKAKEEKILLQGDKVDPDKLRQEREKLELQ KKKGGFCFPSGGYLLPRSVAKNLWGYIRTVCFPEIARLEAEVKAAEDARKRAEAAAAEEARRQREVEREAARQALLKIERTVEINENSKCLEDLEMLRNA PPAEQLPSSGEESSPDHLQDDALGGFKFDGDSNPLERLGLFMKDDEEEEEGCEPINSIAENKTDDVEEGEID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27260		GTE8	global transcription factor gr...		Lus10032076 [exp]	0	1
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	5.9	0.8470
AT5G09390			CD2-binding protein-related (....		Lus10009320 [exp]	6.5	0.8019
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	9.8	0.7998
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	10.0	0.8125
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	11.0	0.7261
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	11.3	0.8401
AT4G25550			Cleavage/polyadenylation speci...		Lus10038867 [exp]	11.5	0.7665
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10035958 [exp]	11.8	0.8173
AT5G05230			RING/U-box superfamily protein...		Lus10034237 [exp]	13.9	0.7243
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	15.4	0.8218

Compare expression of checked genes

Lus10032076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.