Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27250 118 / 1e-31 unknown protein AT5G40790 110 / 1e-28 unknown protein AT5G40800 105 / 7e-27 unknown protein AT3G48510 96 / 4e-23 unknown protein AT5G50360 83 / 2e-18 unknown protein AT5G63350 80 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014610 [exp] 366 / 5e-129 AT3G27250 119 / 5e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091900 [exp] 115 / 3e-30 AT5G50360 221 / 8e-71 unknown protein Potri.012G094400 [exp] 108 / 1e-27 AT5G50360 233 / 3e-75 unknown protein Potri.001G334500 [exp] 91 / 8e-21 AT3G27250 153 / 6e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032077 pacid=23161330 polypeptide=Lus10032077 locus=Lus10032077.g ID=Lus10032077.BGIv1.0 annot-version=v1.0 ATGGACGGCGGAGGAGGAGGGGAAAAGTTCCGACTGACAAACTTCACAGATGGGGGATCGGTGCAAGATGAGTCAACGATAATCAACCGGATGATGCTCA GATTCCGCCCCATCGCTCCAAAACCAGCCGCCGGCGTCGGCTCCGCCGGATCCAGACCGCTTCCCAAGGTAAGGACGAAGCGTAAGTACGTAAGGGTTAC GGCCGCCAGAAGGAAGAACAACAAAAAAGATAATGATAATAATAATAATAATAAGTTAGGTGAAGAAGAAGAAGAGGCATCAGATCGGATGACGCTCCAG CTGCTTCCGCCGGAGAGAGTAATAACGGCGGAGGGTGTTGGTGGTGGTGGTAGATCTGAGGTGGAGGATGAGGCGGTGGAGACGTGGGTGACGGCGGAGG AAGGGGTGGTGGAGGAGTGCATGGAGAGGAATAACAAAGGGTTGTTAGGGAAGGAGGATCTTGATGAGGACACGTGTCCAGTGTTTGTATCGGACGGTGA GGGGAACGTGGTGTGGGTAAATGAAGCGTACAGGGAGATGGCCGGTAGAGTCGATAAGGTTCCCAACAAGGTAATAGTGAGGTTGGCGGTTGCTGAGAAG GTAAGGCCGTACTTGGAGAGCTACCAAGTGCCATTTAGTTGCTGGGTAGGGCTCAAGTTTAGAGTTCATCATAGTAATAGTAAAGATGAGTGGAAATGGT GGTATATGAGGGTTCCATGTGATGTGTGGAAAATGGAACGTGGCGAGGGGTTTGCTTGGAGATTGGATGTTAAGGTTGCCCTCAAACTTGGTCTCTAA
AA sequence Show only first row Show all	>Lus10032077 pacid=23161330 polypeptide=Lus10032077 locus=Lus10032077.g ID=Lus10032077.BGIv1.0 annot-version=v1.0 MDGGGGGEKFRLTNFTDGGSVQDESTIINRMMLRFRPIAPKPAAGVGSAGSRPLPKVRTKRKYVRVTAARRKNNKKDNDNNNNNKLGEEEEEASDRMTLQ LLPPERVITAEGVGGGGRSEVEDEAVETWVTAEEGVVEECMERNNKGLLGKEDLDEDTCPVFVSDGEGNVVWVNEAYREMAGRVDKVPNKVIVRLAVAEK VRPYLESYQVPFSCWVGLKFRVHHSNSKDEWKWWYMRVPCDVWKMERGEGFAWRLDVKVALKLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27250			unknown protein		Lus10032077 [exp]	0	1
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	1.4	0.9229
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	1.4	0.9282
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10038923 [exp]	2.4	0.9156
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10008007 [exp]	4.0	0.9084
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	4.9	0.8801
					Lus10035430 [exp]	5.7	0.8451
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	5.9	0.8827
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	8.5	0.8717
					Lus10032068 [exp]	10.7	0.8408
AT4G27310	CO		B-box type zinc finger family ...		Lus10031593 [exp]	10.9	0.8447

Compare expression of checked genes

Lus10032077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.