Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16780 47 / 5e-07 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014613 [exp] 112 / 4e-33 AT5G16780 110 / 6e-29 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10000639 [exp] 75 / 1e-16 AT5G16780 818 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10023155 [exp] 71 / 3e-15 AT5G16780 811 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10000285 [exp] 64 / 1e-12 AT5G16780 187 / 1e-53 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082100 [exp] 53 / 6e-09 AT5G16780 767 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03343 [flax] [poplar] SART-1 SART-1 family
Representative CDS sequence Show only first row Show all	>Lus10032078 pacid=23161306 polypeptide=Lus10032078 locus=Lus10032078.g ID=Lus10032078.BGIv1.0 annot-version=v1.0 ATGGTTGGTACAGGTACAACTTTTGTAACGGTCGCTACCATCCCCCAACGTCGCAGTTGTTCGAGCTCAACTGAGATCGAACAGTTCGTCGGAGGTTTGC AGATCGATGTGTACAGAGAAGGTTATAAGGCTGGTGGGTTCACAGGAGCAGACAACGAGACAATTAAAGATGAAGACAGTACTAGTGTCATCATGCAGCA AGATGCGAAAGACGAGATATTTCATGAAGTTGGTGTTGGCAGAGGATTGTCAGGCGCATTGAAGCTGCTTCATGAGCGGGGAGCACTCAAAGAAAGCATC AACTTGGATTCCGTGGATCGGTTAAGGATATTCGTATCGAGAGGGATACGAATTTGGCAGAATTATGACTCCAAAACAGTCATTTAG
AA sequence Show only first row Show all	>Lus10032078 pacid=23161306 polypeptide=Lus10032078 locus=Lus10032078.g ID=Lus10032078.BGIv1.0 annot-version=v1.0 MVGTGTTFVTVATIPQRRSCSSSTEIEQFVGGLQIDVYREGYKAGGFTGADNETIKDEDSTSVIMQQDAKDEIFHEVGVGRGLSGALKLLHERGALKESI NLDSVDRLRIFVSRGIRIWQNYDSKTVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10032078 [exp]	0	1
					Lus10012497 [exp]	1.0	0.8035
AT3G54570			Plant calmodulin-binding prote...		Lus10039544 [exp]	4.6	0.7535
AT2G37050			Leucine-rich repeat protein ki...		Lus10019907 [exp]	10.0	0.7535
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10019155 [exp]	12.2	0.7474
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	12.2	0.7676
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10014981 [exp]	13.6	0.6499
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	13.9	0.7065
					Lus10008258 [exp]	18.4	0.6225
AT3G26950			unknown protein		Lus10035181 [exp]	31.5	0.6564
AT5G14940			Major facilitator superfamily ...		Lus10039465 [exp]	33.7	0.6611

Compare expression of checked genes

Lus10032078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.